Variant report

Variant	rs35335169
Chromosome Location	chr15:77472951-77472952
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12904882	0.91[ASN][1000 genomes]
rs3812913	1.00[AMR][1000 genomes]
rs3812914	1.00[AMR][1000 genomes]
rs56079860	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7174930	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	esv1832234	chr15:77451350-77694607	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77451000-77478800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr15:77451200-77491800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:77457200-77475200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr15:77457200-77475400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr15:77460800-77479200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr15:77461600-77496800	Weak transcription	Lung	lung
7	chr15:77465200-77477000	Weak transcription	Gastric	stomach
8	chr15:77465400-77488200	Weak transcription	Psoas Muscle	Psoas
9	chr15:77466200-77479000	Weak transcription	Brain Anterior Caudate	brain
10	chr15:77466200-77479400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr15:77467200-77491400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr15:77468600-77473400	Strong transcription	Osteobl	bone
13	chr15:77468600-77474800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr15:77468600-77475400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr15:77468800-77473800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr15:77469000-77474400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:77469000-77480200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr15:77469400-77483800	Weak transcription	Colon Smooth Muscle	Colon
19	chr15:77469800-77491200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr15:77469800-77499200	Weak transcription	Rectal Smooth Muscle	rectum
21	chr15:77470400-77475600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr15:77470600-77473000	Enhancers	Duodenum Mucosa	Duodenum
23	chr15:77470600-77473000	Enhancers	Fetal Heart	heart
24	chr15:77470800-77474200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr15:77471000-77473200	Genic enhancers	Fetal Intestine Large	intestine
26	chr15:77471000-77474200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr15:77471000-77474800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr15:77471000-77475200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr15:77471000-77479000	Weak transcription	Brain Angular Gyrus	brain
30	chr15:77471000-77482600	Weak transcription	Fetal Brain Male	brain
31	chr15:77471200-77473000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr15:77471200-77473000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr15:77471200-77473000	Strong transcription	HepG2	liver
34	chr15:77471200-77473400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr15:77471200-77473400	Strong transcription	Fetal Lung	lung
36	chr15:77471200-77473400	Strong transcription	Skeletal Muscle Male	skeletal muscle
37	chr15:77471200-77473600	Enhancers	Primary B cells from peripheral blood	blood
38	chr15:77471200-77473600	Enhancers	Placenta	Placenta
39	chr15:77471200-77473600	Enhancers	Small Intestine	intestine
40	chr15:77471200-77473600	Strong transcription	HUVEC	blood vessel
41	chr15:77471200-77473800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr15:77471200-77474000	Strong transcription	HSMM	muscle
43	chr15:77471200-77474200	Strong transcription	Fetal Muscle Trunk	muscle
44	chr15:77471200-77474200	Strong transcription	Fetal Muscle Leg	muscle
45	chr15:77471200-77474200	Strong transcription	Fetal Stomach	stomach
46	chr15:77471200-77474400	Strong transcription	NHDF-Ad	bronchial
47	chr15:77471200-77474800	Strong transcription	Muscle Satellite Cultured Cells	--
48	chr15:77471200-77475200	Enhancers	Primary T cells fromperipheralblood	blood
49	chr15:77471200-77475200	Enhancers	Fetal Thymus	thymus
50	chr15:77471200-77475400	Enhancers	Primary T helper cells fromperipheralblood	blood

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