Variant report

Variant	rs56079860
Chromosome Location	chr15:77407516-77407517
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77397830..77402873-chr15:77403837..77409871,6	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12904882	0.91[ASN][1000 genomes]
rs35335169	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3812913	1.00[AMR][1000 genomes]
rs3812914	1.00[AMR][1000 genomes]
rs7174930	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77394600-77413400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr15:77397600-77411200	Weak transcription	HUVEC	blood vessel
3	chr15:77397800-77411400	Weak transcription	Fetal Thymus	thymus
4	chr15:77398000-77411600	Weak transcription	Fetal Brain Female	brain
5	chr15:77400000-77411400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:77400200-77411400	Weak transcription	Stomach Mucosa	stomach
7	chr15:77400200-77424200	Weak transcription	Esophagus	oesophagus
8	chr15:77400200-77427200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:77400200-77429000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:77400400-77411400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr15:77400400-77413000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr15:77400400-77428600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr15:77400600-77411400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr15:77400600-77411400	Weak transcription	Brain Substantia Nigra	brain
15	chr15:77400600-77411400	Weak transcription	Small Intestine	intestine
16	chr15:77400600-77425400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr15:77401000-77411600	Weak transcription	Fetal Kidney	kidney
18	chr15:77401600-77449600	Weak transcription	Colonic Mucosa	Colon
19	chr15:77401800-77411400	Weak transcription	NH-A	brain
20	chr15:77402000-77407600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr15:77402800-77412600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr15:77403000-77407600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr15:77404200-77407600	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr15:77404200-77407600	Strong transcription	Fetal Stomach	stomach
25	chr15:77404200-77407800	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr15:77404200-77408200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr15:77404200-77430800	Weak transcription	Thymus	Thymus
28	chr15:77404400-77409000	Weak transcription	K562	blood
29	chr15:77404600-77411600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr15:77404600-77419200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr15:77404600-77435600	Weak transcription	HMEC	breast
32	chr15:77405000-77407800	Strong transcription	Primary B cells from cord blood	blood
33	chr15:77405000-77411400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr15:77405000-77411400	Weak transcription	GM12878-XiMat	blood
35	chr15:77405200-77407600	Strong transcription	Brain Cingulate Gyrus	brain
36	chr15:77405200-77407600	Strong transcription	Spleen	Spleen
37	chr15:77405200-77411400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr15:77405400-77407600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr15:77405600-77407600	Strong transcription	Primary T cells from cord blood	blood
40	chr15:77405600-77407600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr15:77405600-77407600	Strong transcription	Placenta	Placenta
42	chr15:77405600-77407600	Strong transcription	Lung	lung
43	chr15:77405600-77407600	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr15:77405600-77408200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr15:77405800-77407600	Genic enhancers	Rectal Mucosa Donor 29	rectum
46	chr15:77406000-77407600	Strong transcription	Primary monocytes fromperipheralblood	blood
47	chr15:77406000-77407600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr15:77406000-77407600	Strong transcription	Adipose Nuclei	Adipose
49	chr15:77406000-77407600	Strong transcription	Osteobl	bone
50	chr15:77406000-77411400	Weak transcription	Right Atrium	heart

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