Variant report

Variant	rs35339127
Chromosome Location	chr7:13970266-13970267
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10260700	1.00[AMR][1000 genomes]
rs10273760	1.00[AMR][1000 genomes]
rs28405503	1.00[AMR][1000 genomes]
rs28665785	1.00[AMR][1000 genomes]
rs7782543	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019873	chr7:13707148-14133367	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1020310	chr7:13839681-14015794	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538738	chr7:13839681-14015794	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv887698	chr7:13841798-14056075	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1020543	chr7:13851470-14021121	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv949467	chr7:13938464-14279074	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv887700	chr7:13948517-14042702	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv887701	chr7:13955324-13988170	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:13930800-13971000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:13933800-13983600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:13945600-13974400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr7:13960200-13971200	Weak transcription	Pancreas	Pancrea
5	chr7:13960200-13973000	Weak transcription	Aorta	Aorta
6	chr7:13960200-13983600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:13960200-13987400	Weak transcription	K562	blood
8	chr7:13960200-13988200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr7:13960400-13971200	Weak transcription	Fetal Brain Female	brain
10	chr7:13960400-13985200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr7:13960400-13989000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr7:13960600-13971000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:13960600-13973000	Weak transcription	Fetal Kidney	kidney
14	chr7:13960600-13975600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr7:13960600-13978400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr7:13960600-13979600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr7:13960800-13977000	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr7:13960800-13985400	Weak transcription	NH-A	brain
19	chr7:13961200-13972400	Weak transcription	NHLF	lung
20	chr7:13961400-13985000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr7:13961800-13979000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr7:13962200-13979200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr7:13962800-13981400	Weak transcription	NHDF-Ad	bronchial
24	chr7:13963200-13985200	Weak transcription	Osteobl	bone
25	chr7:13963800-13979600	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr7:13964400-13976000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
27	chr7:13964800-13970800	Weak transcription	Fetal Heart	heart
28	chr7:13965000-13972600	Weak transcription	Stomach Smooth Muscle	stomach
29	chr7:13966000-13975200	Weak transcription	Esophagus	oesophagus
30	chr7:13966000-13979200	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr7:13966200-13975800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr7:13966400-13978200	Weak transcription	Fetal Intestine Small	intestine
33	chr7:13966800-13976600	Weak transcription	Rectal Smooth Muscle	rectum
34	chr7:13967000-13971400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr7:13967000-13973000	Weak transcription	Fetal Intestine Large	intestine
36	chr7:13967200-13979200	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr7:13967600-13973000	Weak transcription	Fetal Muscle Trunk	muscle
38	chr7:13968000-13971400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr7:13968000-13972000	Weak transcription	Brain Germinal Matrix	brain
40	chr7:13968000-13973200	Weak transcription	Brain Cingulate Gyrus	brain
41	chr7:13968000-13975000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr7:13968400-13971400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr7:13968600-13971400	Strong transcription	Fetal Lung	lung
44	chr7:13968800-13971800	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr7:13968800-13972000	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr7:13968800-13976000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr7:13969000-13971000	Weak transcription	Fetal Brain Male	brain
48	chr7:13969000-13971800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr7:13969000-13973400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr7:13969200-13971400	Strong transcription	Fetal Stomach	stomach

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