Variant report

Variant	rs353606
Chromosome Location	chr11:35103106-35103107
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35101233..35103768-chr11:35185557..35187275,2	MCF-7	breast:
2	chr11:35097231..35099674-chr11:35101240..35103980,3	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2467600	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2467601	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2732570	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs353586	0.86[AMR][1000 genomes]
rs353590	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs353592	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs353595	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs353597	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs353604	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs353607	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs353608	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv430371	chr11:34975067-35111292	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv540999	chr11:35021936-35185471	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	esv2758263	chr11:35029933-35226784	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	esv2759818	chr11:35029933-35238578	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv541000	chr11:35053717-35185471	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv541001	chr11:35053717-35224624	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
8	esv2757437	chr11:35067482-35238578	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
9	esv2752912	chr11:35074167-35238578	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
10	nsv508623	chr11:35094933-35203363	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
11	nsv541002	chr11:35101282-35224624	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35097600-35103800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr11:35097600-35106400	Enhancers	Primary B cells from peripheral blood	blood
3	chr11:35097800-35106600	Enhancers	Fetal Thymus	thymus
4	chr11:35098600-35103200	Weak transcription	Adipose Nuclei	Adipose
5	chr11:35098800-35103400	Weak transcription	Pancreas	Pancrea
6	chr11:35098800-35103600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr11:35098800-35103800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:35098800-35104000	Weak transcription	Psoas Muscle	Psoas
9	chr11:35098800-35104000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr11:35098800-35104000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr11:35098800-35105400	Weak transcription	Small Intestine	intestine
12	chr11:35099400-35103800	Weak transcription	K562	blood
13	chr11:35099400-35104400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr11:35099600-35103800	Enhancers	Primary T cells fromperipheralblood	blood
15	chr11:35099600-35104000	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr11:35099800-35104000	Weak transcription	Stomach Mucosa	stomach
17	chr11:35099800-35104200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:35100000-35103800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:35100000-35103800	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr11:35100000-35103800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr11:35100000-35103800	Weak transcription	A549	lung
22	chr11:35100000-35103800	Weak transcription	HSMM	muscle
23	chr11:35100000-35103800	Weak transcription	NH-A	brain
24	chr11:35100200-35103200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr11:35100200-35103200	Weak transcription	NHDF-Ad	bronchial
26	chr11:35100200-35103600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr11:35100200-35103800	Enhancers	Primary T cells from cord blood	blood
28	chr11:35100200-35103800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr11:35100200-35103800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr11:35100200-35103800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr11:35100200-35103800	Weak transcription	Esophagus	oesophagus
32	chr11:35100200-35103800	Enhancers	GM12878-XiMat	blood
33	chr11:35100200-35104000	Enhancers	Primary B cells from cord blood	blood
34	chr11:35100400-35103600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr11:35100400-35103800	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr11:35100400-35103800	Enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr11:35100800-35103400	Weak transcription	Osteobl	bone
38	chr11:35100800-35103800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr11:35100800-35103800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
40	chr11:35101000-35103800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr11:35101000-35103800	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr11:35101200-35103400	Weak transcription	HUVEC	blood vessel
43	chr11:35101200-35103800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr11:35101400-35103200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr11:35101400-35103200	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr11:35101400-35103200	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr11:35101400-35103200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr11:35101400-35103200	Weak transcription	HMEC	breast
49	chr11:35101400-35103200	Weak transcription	NHLF	lung
50	chr11:35101400-35103400	Weak transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links