Variant report

Variant	rs35368806
Chromosome Location	chr6:113966354-113966355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:113964552..113967035-chr6:114182588..114184413,2	MCF-7	breast:
2	chr6:113962572..113972353-chr6:114176344..114182135,15	MCF-7	breast:
3	chr6:113963984..113967519-chr6:114178085..114180547,4	MCF-7	breast:
4	chr6:113851813..113853659-chr6:113964029..113966522,2	MCF-7	breast:
5	chr6:113815586..113817124-chr6:113964551..113966518,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155130	Chromatin interaction
ENSG00000236347	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2166041	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35586117	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72952697	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7746603	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9374411	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9374412	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113954200-113970600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:113954600-113970400	Weak transcription	Right Atrium	heart
3	chr6:113956800-113966400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:113959400-113972000	Weak transcription	Gastric	stomach
5	chr6:113960800-113967600	Enhancers	Fetal Intestine Small	intestine
6	chr6:113962600-113967600	Enhancers	Fetal Intestine Large	intestine
7	chr6:113963600-113967600	Enhancers	Fetal Heart	heart
8	chr6:113963600-113967600	Enhancers	Placenta	Placenta
9	chr6:113964000-113967400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:113964000-113967400	Enhancers	HepG2	liver
11	chr6:113964000-113967600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:113964000-113968000	Weak transcription	Primary B cells from cord blood	blood
13	chr6:113964000-113969800	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr6:113964200-113966400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:113964200-113966600	Weak transcription	Pancreas	Pancrea
16	chr6:113964200-113967000	Enhancers	Duodenum Mucosa	Duodenum
17	chr6:113964400-113968400	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr6:113964400-113970200	Weak transcription	Adipose Nuclei	Adipose
19	chr6:113964600-113966600	Weak transcription	Fetal Muscle Leg	muscle
20	chr6:113964600-113966800	Weak transcription	Fetal Thymus	thymus
21	chr6:113964600-113970600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:113964600-113970600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr6:113964800-113966800	Weak transcription	Primary B cells from peripheral blood	blood
24	chr6:113964800-113967400	Enhancers	Stomach Mucosa	stomach
25	chr6:113964800-113967400	Enhancers	A549	lung
26	chr6:113964800-113968200	Enhancers	Rectal Mucosa Donor 29	rectum
27	chr6:113964800-113969800	Weak transcription	Liver	Liver
28	chr6:113964800-113972400	Weak transcription	Fetal Lung	lung
29	chr6:113965000-113966600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr6:113965000-113971200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr6:113965200-113966400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr6:113965200-113966400	Enhancers	Osteobl	bone
33	chr6:113965200-113967000	Enhancers	Small Intestine	intestine
34	chr6:113965200-113967400	Enhancers	Muscle Satellite Cultured Cells	--
35	chr6:113965200-113967400	Enhancers	NHDF-Ad	bronchial
36	chr6:113965200-113967600	Enhancers	NH-A	brain
37	chr6:113965200-113968000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr6:113965200-113968000	Enhancers	Rectal Mucosa Donor 31	rectum
39	chr6:113965200-113970000	Enhancers	NHEK	skin
40	chr6:113965400-113966400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr6:113965400-113967200	Enhancers	HSMM	muscle
42	chr6:113965400-113967200	Enhancers	HSMMtube	muscle
43	chr6:113965400-113967400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr6:113965400-113967600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr6:113965400-113967600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr6:113965600-113970000	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr6:113965800-113966800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr6:113965800-113967200	Enhancers	NHLF	lung
49	chr6:113965800-113967600	Enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr6:113965800-113967600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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