Variant report

Variant	rs7746603
Chromosome Location	chr6:113969841-113969842
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:113968002..113970108-chr6:114178311..114180011,3	MCF-7	breast:
2	chr6:113962572..113972353-chr6:114176344..114182135,15	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155130	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2166041	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35368806	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35586117	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72952697	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9374411	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374412	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:113954200-113970600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:113954600-113970400	Weak transcription	Right Atrium	heart
3	chr6:113959400-113972000	Weak transcription	Gastric	stomach
4	chr6:113964400-113970200	Weak transcription	Adipose Nuclei	Adipose
5	chr6:113964600-113970600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:113964600-113970600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:113964800-113972400	Weak transcription	Fetal Lung	lung
8	chr6:113965000-113971200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:113965200-113970000	Enhancers	NHEK	skin
10	chr6:113965600-113970000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr6:113966800-113971400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:113967000-113972400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:113967200-113971200	Weak transcription	Fetal Muscle Leg	muscle
14	chr6:113967400-113970000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:113967400-113970000	Weak transcription	A549	lung
16	chr6:113967400-113971600	Weak transcription	Fetal Thymus	thymus
17	chr6:113967400-113972400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:113967400-113972400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr6:113967400-113972400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr6:113967400-113975600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr6:113967600-113970000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:113967600-113970000	Weak transcription	Fetal Intestine Large	intestine
23	chr6:113967600-113970000	Weak transcription	HMEC	breast
24	chr6:113967600-113970000	Weak transcription	Osteobl	bone
25	chr6:113967600-113970600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr6:113967600-113971800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:113967600-113971800	Weak transcription	Esophagus	oesophagus
28	chr6:113967600-113972400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr6:113967600-113980600	Weak transcription	Placenta	Placenta
30	chr6:113968000-113972000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr6:113968400-113972000	Enhancers	Sigmoid Colon	Sigmoid Colon
32	chr6:113968600-113970000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr6:113968800-113970000	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr6:113968800-113970000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:113968800-113970000	Enhancers	Rectal Mucosa Donor 29	rectum
36	chr6:113969000-113970000	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr6:113969000-113970400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr6:113969000-113971600	Enhancers	Stomach Mucosa	stomach
39	chr6:113969200-113970000	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr6:113969200-113970200	Weak transcription	Primary B cells from peripheral blood	blood
41	chr6:113969200-113970600	Weak transcription	Primary B cells from cord blood	blood
42	chr6:113969400-113970400	Enhancers	Duodenum Mucosa	Duodenum
43	chr6:113969400-113970800	Enhancers	Small Intestine	intestine
44	chr6:113969400-113971600	Enhancers	HepG2	liver
45	chr6:113969600-113971000	Enhancers	Fetal Intestine Small	intestine
46	chr6:113969800-113970000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr6:113969800-113970000	Active TSS	GM12878-XiMat	blood
48	chr6:113969800-113970400	Enhancers	Primary neutrophils fromperipheralblood	blood
49	chr6:113969800-113970400	Enhancers	Liver	Liver
50	chr6:113969800-113970800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum

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