Variant report

Variant	rs35371002
Chromosome Location	chr6:71260462-71260463
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:71259313..71261414-chr6:71262215..71264964,3	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs13194594	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13197182	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13198944	0.87[EUR][1000 genomes]
rs13207234	0.86[EUR][1000 genomes]
rs13210191	0.83[EUR][1000 genomes]
rs13218183	0.92[EUR][1000 genomes]
rs13220004	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17634619	0.91[EUR][1000 genomes]
rs28360504	0.91[EUR][1000 genomes]
rs34238069	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34257638	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34401692	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34710086	0.91[EUR][1000 genomes]
rs35426375	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35457911	0.92[EUR][1000 genomes]
rs35462174	0.91[EUR][1000 genomes]
rs35542509	0.95[EUR][1000 genomes]
rs57836066	0.92[EUR][1000 genomes]
rs62419669	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62420323	0.84[EUR][1000 genomes]
rs62420326	0.91[EUR][1000 genomes]
rs62421394	0.95[EUR][1000 genomes]
rs62421868	0.92[EUR][1000 genomes]
rs62421869	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62421874	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62421877	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs997350	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1027049	chr6:70961610-71561488	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv524328	chr6:70961833-71558805	Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv886145	chr6:71119524-71317480	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv886146	chr6:71219464-71317480	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71210600-71262000	Weak transcription	Fetal Thymus	thymus
2	chr6:71214000-71276000	Weak transcription	Brain Angular Gyrus	brain
3	chr6:71214000-71276000	Weak transcription	Brain Germinal Matrix	brain
4	chr6:71214000-71276000	Weak transcription	Colon Smooth Muscle	Colon
5	chr6:71214400-71262000	Weak transcription	Psoas Muscle	Psoas
6	chr6:71214600-71276000	Weak transcription	A549	lung
7	chr6:71215000-71273000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:71216200-71262200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr6:71228600-71276000	Weak transcription	Primary T cells from cord blood	blood
10	chr6:71229600-71276200	Weak transcription	Aorta	Aorta
11	chr6:71231200-71268000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr6:71236400-71273200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr6:71237000-71276200	Weak transcription	Left Ventricle	heart
14	chr6:71243400-71276200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:71245400-71261400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr6:71245400-71270600	Weak transcription	Adipose Nuclei	Adipose
17	chr6:71245400-71276400	Weak transcription	Esophagus	oesophagus
18	chr6:71245400-71276400	Weak transcription	Gastric	stomach
19	chr6:71245600-71276200	Weak transcription	Primary B cells from cord blood	blood
20	chr6:71249200-71268200	Weak transcription	Fetal Lung	lung
21	chr6:71249200-71273000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr6:71249200-71275800	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr6:71249400-71266800	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr6:71249400-71276200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr6:71249800-71276200	Weak transcription	Fetal Brain Female	brain
26	chr6:71250000-71273400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:71250000-71274600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr6:71250000-71276000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr6:71250000-71276000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr6:71250400-71276000	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr6:71250600-71276000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr6:71250600-71276000	Weak transcription	Stomach Smooth Muscle	stomach
33	chr6:71250600-71276200	Weak transcription	Fetal Muscle Leg	muscle
34	chr6:71251800-71267400	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr6:71251800-71276200	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr6:71252000-71268200	Weak transcription	Ovary	ovary
37	chr6:71252800-71266600	Weak transcription	Brain Hippocampus Middle	brain
38	chr6:71252800-71267600	Weak transcription	Placenta	Placenta
39	chr6:71253400-71276200	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr6:71254000-71267400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:71255200-71268200	Weak transcription	Fetal Stomach	stomach
42	chr6:71255400-71268200	Weak transcription	Fetal Intestine Small	intestine
43	chr6:71257200-71273000	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr6:71257400-71266200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:71257600-71274200	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr6:71257800-71262000	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr6:71257800-71273200	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr6:71258000-71262400	Weak transcription	Fetal Heart	heart
49	chr6:71258000-71273000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr6:71258200-71261400	Weak transcription	Fetal Brain Male	brain

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