Variant report

Variant	rs62421874
Chromosome Location	chr6:71249500-71249501
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs13194594	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13197182	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13198944	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13207234	0.86[EUR][1000 genomes]
rs13210191	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13218183	0.92[EUR][1000 genomes]
rs13220004	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17634619	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28360504	0.91[EUR][1000 genomes]
rs34238069	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34257638	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34401692	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34710086	0.91[EUR][1000 genomes]
rs35371002	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35426375	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35457911	0.92[EUR][1000 genomes]
rs35462174	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35542509	0.95[EUR][1000 genomes]
rs57836066	0.92[EUR][1000 genomes]
rs62419669	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62420323	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62420326	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62421394	0.95[EUR][1000 genomes]
rs62421868	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62421869	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62421877	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs997350	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv886142	chr6:70741209-71251421	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1027049	chr6:70961610-71561488	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv524328	chr6:70961833-71558805	Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv886145	chr6:71119524-71317480	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv886146	chr6:71219464-71317480	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71210600-71262000	Weak transcription	Fetal Thymus	thymus
2	chr6:71214000-71249600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:71214000-71250600	Weak transcription	Right Ventricle	heart
4	chr6:71214000-71253000	Weak transcription	Colonic Mucosa	Colon
5	chr6:71214000-71253000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr6:71214000-71256600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:71214000-71276000	Weak transcription	Brain Angular Gyrus	brain
8	chr6:71214000-71276000	Weak transcription	Brain Germinal Matrix	brain
9	chr6:71214000-71276000	Weak transcription	Colon Smooth Muscle	Colon
10	chr6:71214400-71251000	Weak transcription	Brain Substantia Nigra	brain
11	chr6:71214400-71251800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr6:71214400-71257000	Weak transcription	Brain Anterior Caudate	brain
13	chr6:71214400-71262000	Weak transcription	Psoas Muscle	Psoas
14	chr6:71214600-71251200	Weak transcription	K562	blood
15	chr6:71214600-71276000	Weak transcription	A549	lung
16	chr6:71215000-71273000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:71216200-71262200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr6:71219000-71258800	Weak transcription	Small Intestine	intestine
19	chr6:71228600-71276000	Weak transcription	Primary T cells from cord blood	blood
20	chr6:71229600-71276200	Weak transcription	Aorta	Aorta
21	chr6:71231200-71268000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr6:71231800-71257200	Weak transcription	Fetal Heart	heart
23	chr6:71232800-71251200	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr6:71233400-71256800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:71234800-71250800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr6:71234800-71256600	Weak transcription	HepG2	liver
27	chr6:71235600-71258200	Weak transcription	Liver	Liver
28	chr6:71236400-71273200	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr6:71237000-71276200	Weak transcription	Left Ventricle	heart
30	chr6:71237600-71257400	Weak transcription	Osteobl	bone
31	chr6:71240200-71251600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr6:71240600-71254000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:71240800-71253800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr6:71240800-71256400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr6:71241600-71257400	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr6:71242000-71251000	Weak transcription	Primary hematopoietic stem cells	blood
37	chr6:71242800-71257400	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr6:71243400-71249600	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr6:71243400-71250600	Weak transcription	NH-A	brain
40	chr6:71243400-71250800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:71243400-71276200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr6:71243600-71259800	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr6:71244200-71253200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr6:71244600-71250000	Strong transcription	HUES64 Cell Line	embryonic stem cell
45	chr6:71245400-71251200	Weak transcription	Ovary	ovary
46	chr6:71245400-71254000	Weak transcription	Fetal Stomach	stomach
47	chr6:71245400-71257200	Weak transcription	Rectal Smooth Muscle	rectum
48	chr6:71245400-71258800	Weak transcription	Lung	lung
49	chr6:71245400-71261400	Weak transcription	Fetal Muscle Trunk	muscle
50	chr6:71245400-71270600	Weak transcription	Adipose Nuclei	Adipose

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