Variant report

Variant	rs35374948
Chromosome Location	chr1:93586891-93586892
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:93582804..93586275-chr1:93586515..93588443,3	K562	blood:

Variant related genes	Relation type
ENSG00000143033	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12735426	1.00[AFR][1000 genomes]
rs34869303	1.00[AFR][1000 genomes]
rs71652521	1.00[AFR][1000 genomes]
rs71652528	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830614	chr1:93465978-93678700	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv830625	chr1:93566378-93735246	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93546200-93602200	Weak transcription	Aorta	Aorta
2	chr1:93547600-93600000	Weak transcription	HSMMtube	muscle
3	chr1:93548000-93601800	Weak transcription	NHLF	lung
4	chr1:93565200-93625200	Weak transcription	Stomach Mucosa	stomach
5	chr1:93571400-93602200	Weak transcription	Colonic Mucosa	Colon
6	chr1:93572400-93599600	Weak transcription	Spleen	Spleen
7	chr1:93573400-93627000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr1:93573800-93609000	Strong transcription	Fetal Thymus	thymus
9	chr1:93574200-93609000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:93574600-93609000	Strong transcription	Dnd41	blood
11	chr1:93574600-93630200	Weak transcription	Right Ventricle	heart
12	chr1:93575200-93589800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr1:93575800-93589200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr1:93577200-93592800	Weak transcription	Colon Smooth Muscle	Colon
15	chr1:93577200-93597000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr1:93577600-93588800	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr1:93577600-93591400	Weak transcription	Fetal Heart	heart
18	chr1:93577800-93601600	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr1:93578200-93587200	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr1:93578200-93588200	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr1:93578400-93587400	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr1:93578400-93587600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr1:93578800-93613600	Weak transcription	Psoas Muscle	Psoas
24	chr1:93578800-93620600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr1:93579600-93587200	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr1:93579600-93595400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr1:93579800-93587200	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr1:93579800-93588000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr1:93580000-93587600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr1:93580000-93587600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr1:93580000-93588200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr1:93580000-93624000	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr1:93580200-93643600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr1:93580400-93587200	Strong transcription	Placenta	Placenta
35	chr1:93580400-93587200	Strong transcription	HSMM	muscle
36	chr1:93580600-93587200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr1:93580600-93587200	Strong transcription	Adipose Nuclei	Adipose
38	chr1:93581000-93599200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr1:93581200-93616800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr1:93582400-93587200	Strong transcription	HMEC	breast
41	chr1:93582400-93599800	Weak transcription	Brain Hippocampus Middle	brain
42	chr1:93582400-93600000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr1:93582400-93620400	Weak transcription	Small Intestine	intestine
44	chr1:93582400-93642800	Weak transcription	Gastric	stomach
45	chr1:93582600-93587200	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr1:93582600-93600000	Weak transcription	Ovary	ovary
47	chr1:93583000-93601400	Weak transcription	Brain Substantia Nigra	brain
48	chr1:93583000-93604200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr1:93583200-93595200	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr1:93583200-93602000	Weak transcription	NHDF-Ad	bronchial

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