Variant report

Variant	rs71652521
Chromosome Location	chr1:93527523-93527524
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:93323848..93325079-chr1:93527454..93528796,12	K562	blood:
2	chr1:93296941..93299112-chr1:93527214..93529476,2	K562	blood:
3	chr1:93493844..93495450-chr1:93525930..93527938,2	K562	blood:
4	chr1:93433953..93434929-chr1:93527495..93528205,3	MCF-7	breast:
5	chr1:93324231..93325146-chr1:93527492..93528386,4	MCF-7	breast:
6	chr1:93308545..93311072-chr1:93527284..93530224,2	K562	blood:
7	chr1:93486773..93487911-chr1:93527469..93528398,9	K562	blood:
8	chr1:93485808..93487588-chr1:93526047..93528280,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12735426	1.00[AFR][1000 genomes]
rs34869303	1.00[AFR][1000 genomes]
rs35374948	1.00[AFR][1000 genomes]
rs71652528	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830614	chr1:93465978-93678700	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv870775	chr1:93481640-93543119	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93525800-93528600	Enhancers	Fetal Thymus	thymus
2	chr1:93525800-93528600	Enhancers	Dnd41	blood
3	chr1:93527200-93527600	Weak transcription	Thymus	Thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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