Variant report

Variant	rs35376962
Chromosome Location	chr1:161707875-161707876
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:161707782..161710051-chr1:161718235..161721355,3	K562	blood:
2	chr1:161702286..161705058-chr1:161705873..161710501,6	K562	blood:
3	chr1:161454708..161457189-chr1:161706956..161708732,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000081721	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6688140	0.83[AMR][1000 genomes]
rs71634908	0.86[EUR][1000 genomes]
rs9787369	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428257	chr1:161406315-161868263	Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	esv33393	chr1:161478681-162080327	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv464184	chr1:161646807-161885352	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv548075	chr1:161646807-161885352	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	esv1005615	chr1:161707312-161714444	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161700200-161708400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr1:161704000-161708600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr1:161704000-161713800	Weak transcription	HUVEC	blood vessel
4	chr1:161704200-161709000	Weak transcription	Placenta	Placenta
5	chr1:161705400-161708000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:161705400-161708600	Enhancers	H1 Cell Line	embryonic stem cell
7	chr1:161705800-161708000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr1:161706800-161708400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:161706800-161708800	Enhancers	GM12878-XiMat	blood
10	chr1:161706800-161713600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:161706800-161718800	Weak transcription	NH-A	brain
12	chr1:161707000-161708000	Enhancers	H9 Cell Line	embryonic stem cell
13	chr1:161707000-161708000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr1:161707000-161711600	Enhancers	K562	blood
15	chr1:161707200-161711400	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr1:161707400-161713000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr1:161707600-161711200	Weak transcription	A549	lung
18	chr1:161707600-161713000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr1:161707600-161713200	Weak transcription	NHDF-Ad	bronchial
20	chr1:161707600-161719200	Weak transcription	NHLF	lung
21	chr1:161707800-161708000	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr1:161707800-161708000	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr1:161707800-161708200	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr1:161707800-161708200	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr1:161707800-161708200	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
26	chr1:161707800-161711600	Enhancers	Primary B cells from peripheral blood	blood

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