Variant report

Variant	rs6688140
Chromosome Location	chr1:161682975-161682976
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2185551	1.00[AFR][1000 genomes]
rs34312480	0.81[AMR][1000 genomes]
rs34807957	0.91[EUR][1000 genomes]
rs35376962	0.83[AMR][1000 genomes]
rs35699192	1.00[AFR][1000 genomes]
rs36080602	0.81[AMR][1000 genomes]
rs61804205	1.00[AFR][1000 genomes]
rs61804206	1.00[AFR][1000 genomes]
rs61804207	1.00[AFR][1000 genomes]
rs61804208	1.00[AFR][1000 genomes]
rs61804210	1.00[AFR][1000 genomes]
rs61804211	1.00[AFR][1000 genomes]
rs71634906	0.91[EUR][1000 genomes]
rs7525363	1.00[AFR][1000 genomes]
rs7554873	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428257	chr1:161406315-161868263	Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	esv33393	chr1:161478681-162080327	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	esv1822760	chr1:161480943-161687379	Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv464184	chr1:161646807-161885352	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv548075	chr1:161646807-161885352	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161676200-161692000	Weak transcription	Spleen	Spleen
2	chr1:161680400-161683600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:161681400-161683000	Genic enhancers	GM12878-XiMat	blood
4	chr1:161682000-161683800	Strong transcription	Primary B cells from cord blood	blood
5	chr1:161682000-161684200	Strong transcription	Primary B cells from peripheral blood	blood
6	chr1:161682200-161683400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:161682600-161689600	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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