Variant report

Variant	rs35377510
Chromosome Location	chr4:57918173-57918174
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:57843657..57845582-chr4:57917251..57920235,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000047315	Chromatin interaction
ENSG00000084092	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13109351	1.00[AFR][1000 genomes]
rs13121750	1.00[AFR][1000 genomes]
rs13138730	1.00[AFR][1000 genomes]
rs35529818	1.00[AFR][1000 genomes]
rs71601657	1.00[AFR][1000 genomes]
rs71601658	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57899400-57925000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr4:57899600-57942200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:57904800-57922200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr4:57910400-57921200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr4:57911800-57919600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:57912000-57920200	Weak transcription	Aorta	Aorta
7	chr4:57913000-57921200	Weak transcription	Fetal Stomach	stomach
8	chr4:57913000-57922000	Weak transcription	NHLF	lung
9	chr4:57913000-57922600	Weak transcription	Ovary	ovary
10	chr4:57914000-57919600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr4:57915000-57918400	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr4:57915000-57921200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr4:57915200-57922400	Weak transcription	Brain Hippocampus Middle	brain
14	chr4:57915400-57923600	Weak transcription	HSMM	muscle
15	chr4:57915600-57922600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr4:57915600-57923000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr4:57915600-57924200	Enhancers	Left Ventricle	heart
18	chr4:57915800-57930200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr4:57916000-57918400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr4:57916000-57919400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr4:57916000-57919400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr4:57916000-57919400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr4:57916000-57919400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr4:57916000-57919400	Weak transcription	HMEC	breast
25	chr4:57916000-57919600	Weak transcription	A549	lung
26	chr4:57916000-57922000	Weak transcription	Brain Anterior Caudate	brain
27	chr4:57916400-57918600	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr4:57916600-57919000	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr4:57916600-57919400	Strong transcription	Osteobl	bone
30	chr4:57916800-57918200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr4:57916800-57919000	Enhancers	Right Atrium	heart
32	chr4:57917000-57918600	Genic enhancers	HSMMtube	muscle
33	chr4:57917200-57918600	Enhancers	Stomach Smooth Muscle	stomach
34	chr4:57917200-57918800	Enhancers	Adipose Nuclei	Adipose
35	chr4:57917400-57918600	Enhancers	Fetal Muscle Leg	muscle
36	chr4:57917400-57918600	Enhancers	Lung	lung
37	chr4:57917400-57919000	Enhancers	Spleen	Spleen
38	chr4:57917400-57919800	Enhancers	Psoas Muscle	Psoas
39	chr4:57917400-57920400	Enhancers	Right Ventricle	heart
40	chr4:57917600-57922200	Weak transcription	Rectal Smooth Muscle	rectum
41	chr4:57917600-57931000	Weak transcription	Pancreas	Pancrea
42	chr4:57917800-57921600	Weak transcription	Colon Smooth Muscle	Colon
43	chr4:57917800-57922600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr4:57917800-57926000	Weak transcription	Fetal Kidney	kidney
45	chr4:57918000-57918400	Weak transcription	NH-A	brain
46	chr4:57918000-57918400	Genic enhancers	NHEK	skin
47	chr4:57918000-57918600	Enhancers	Monocytes-CD14+_RO01746	blood
48	chr4:57918000-57918800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr4:57918000-57918800	Enhancers	Fetal Muscle Trunk	muscle
50	chr4:57918000-57919000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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