Variant report

Variant	rs35379534
Chromosome Location	chr4:79462094-79462095
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:79457662..79460244-chr4:79461746..79464247,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7682977	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79363800-79464200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:79385000-79467400	Weak transcription	Fetal Brain Male	brain
3	chr4:79393800-79467200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr4:79401000-79467200	Weak transcription	Psoas Muscle	Psoas
5	chr4:79428200-79466200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:79435600-79463000	Weak transcription	Fetal Heart	heart
7	chr4:79435600-79467200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr4:79440600-79465800	Weak transcription	Lung	lung
9	chr4:79440600-79467200	Weak transcription	Left Ventricle	heart
10	chr4:79442400-79465600	Weak transcription	Fetal Stomach	stomach
11	chr4:79444800-79472400	Weak transcription	Right Atrium	heart
12	chr4:79451400-79462800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr4:79451800-79463400	Weak transcription	NHDF-Ad	bronchial
14	chr4:79451800-79463800	Weak transcription	NH-A	brain
15	chr4:79453400-79464200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr4:79453400-79467200	Weak transcription	Placenta	Placenta
17	chr4:79454600-79463800	Strong transcription	H1 Cell Line	embryonic stem cell
18	chr4:79454800-79463600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr4:79455000-79463400	Weak transcription	Fetal Muscle Trunk	muscle
20	chr4:79455400-79463200	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr4:79455400-79464400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr4:79455600-79462600	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr4:79455600-79462800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr4:79456000-79464400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr4:79456200-79463400	Weak transcription	HSMMtube	muscle
26	chr4:79456400-79464600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr4:79456400-79471200	Weak transcription	Fetal Kidney	kidney
28	chr4:79456600-79464000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr4:79456600-79464400	Weak transcription	Pancreas	Pancrea
30	chr4:79456800-79463600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr4:79456800-79464200	Weak transcription	Fetal Lung	lung
32	chr4:79456800-79464600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr4:79457000-79471200	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr4:79457600-79463000	Weak transcription	HMEC	breast
35	chr4:79458600-79463200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr4:79458600-79471000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr4:79459600-79464000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr4:79460400-79463000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
39	chr4:79461000-79463200	Strong transcription	HepG2	liver
40	chr4:79461600-79462200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr4:79461600-79462200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr4:79461600-79462200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr4:79461600-79462600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr4:79461600-79462800	Strong transcription	Fetal Intestine Large	intestine
45	chr4:79461600-79462800	Strong transcription	Fetal Intestine Small	intestine
46	chr4:79461600-79463000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr4:79461600-79463600	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr4:79461800-79462200	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr4:79461800-79466000	Weak transcription	Fetal Muscle Leg	muscle
50	chr4:79462000-79464400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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