Variant report

Variant	rs7682977
Chromosome Location	chr4:79436927-79436928
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:79435238..79438069-chr4:79439361..79441507,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10017266	0.83[AFR][1000 genomes]
rs35379534	0.85[AFR][1000 genomes]
rs56763193	0.93[AFR][1000 genomes]
rs57225312	0.86[AFR][1000 genomes]
rs58042130	0.86[AFR][1000 genomes]
rs59067988	0.86[AFR][1000 genomes]
rs61161063	0.86[AFR][1000 genomes]
rs6816761	0.86[AFR][1000 genomes]
rs72659029	0.89[AFR][1000 genomes]
rs7660641	0.86[AFR][1000 genomes]
rs9995258	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	esv1795666	chr4:79436927-79443850	Weak transcription Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79363400-79455200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr4:79363800-79464200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:79378600-79455800	Weak transcription	Right Ventricle	heart
4	chr4:79385000-79467400	Weak transcription	Fetal Brain Male	brain
5	chr4:79393800-79467200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr4:79401000-79467200	Weak transcription	Psoas Muscle	Psoas
7	chr4:79403200-79449800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:79404200-79450200	Weak transcription	HMEC	breast
9	chr4:79410200-79443600	Weak transcription	HSMMtube	muscle
10	chr4:79410200-79461800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr4:79410800-79439800	Weak transcription	Fetal Lung	lung
12	chr4:79418000-79437800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr4:79420400-79445000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:79421800-79445200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:79426800-79455000	Weak transcription	Esophagus	oesophagus
16	chr4:79427800-79439400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr4:79428000-79437400	Strong transcription	H1 Cell Line	embryonic stem cell
18	chr4:79428000-79437400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr4:79428000-79438400	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr4:79428200-79466200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr4:79428400-79437400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
22	chr4:79428600-79437600	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr4:79428600-79449800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr4:79428600-79459000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr4:79430200-79439800	Weak transcription	Left Ventricle	heart
26	chr4:79430200-79456000	Weak transcription	Aorta	Aorta
27	chr4:79430200-79456000	Weak transcription	Pancreas	Pancrea
28	chr4:79430600-79451400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr4:79430800-79454600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr4:79432200-79448600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr4:79433000-79438200	Weak transcription	Gastric	stomach
32	chr4:79434600-79437200	Strong transcription	HUES6 Cell Line	embryonic stem cell
33	chr4:79434600-79437400	Strong transcription	H9 Cell Line	embryonic stem cell
34	chr4:79435400-79443600	Weak transcription	Fetal Intestine Large	intestine
35	chr4:79435400-79447200	Weak transcription	Fetal Kidney	kidney
36	chr4:79435600-79439800	Weak transcription	Fetal Stomach	stomach
37	chr4:79435600-79455600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr4:79435600-79463000	Weak transcription	Fetal Heart	heart
39	chr4:79435600-79467200	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr4:79435800-79439800	Weak transcription	HepG2	liver
41	chr4:79436200-79437400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr4:79436400-79437400	Strong transcription	Fetal Intestine Small	intestine

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