Variant report

Variant	rs59067988
Chromosome Location	chr4:79392037-79392038
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10017266	0.83[AFR][1000 genomes]
rs56763193	0.93[AFR][1000 genomes]
rs57225312	1.00[AFR][1000 genomes]
rs58042130	0.86[AFR][1000 genomes]
rs60539739	0.93[AFR][1000 genomes]
rs61161063	1.00[AFR][1000 genomes]
rs6816761	1.00[AFR][1000 genomes]
rs72659029	0.90[AFR][1000 genomes]
rs7660641	1.00[AFR][1000 genomes]
rs7682977	0.86[AFR][1000 genomes]
rs9995258	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79320000-79400200	Weak transcription	Psoas Muscle	Psoas
2	chr4:79343200-79431800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr4:79354000-79401600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:79363200-79409800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr4:79363400-79455200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr4:79363800-79464200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:79365600-79406400	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr4:79366200-79408200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr4:79369400-79397800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:79372600-79395000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr4:79374000-79397600	Weak transcription	Fetal Lung	lung
12	chr4:79374200-79398800	Weak transcription	Esophagus	oesophagus
13	chr4:79376200-79398600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr4:79376200-79411600	Weak transcription	Fetal Stomach	stomach
15	chr4:79377000-79396200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr4:79378600-79455800	Weak transcription	Right Ventricle	heart
17	chr4:79378800-79395800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr4:79379800-79393200	Weak transcription	Brain Anterior Caudate	brain
19	chr4:79384600-79395600	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr4:79384600-79396600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr4:79384600-79405400	Strong transcription	H1 Cell Line	embryonic stem cell
22	chr4:79384800-79405000	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr4:79384800-79405600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
24	chr4:79385000-79467400	Weak transcription	Fetal Brain Male	brain
25	chr4:79385800-79396600	Weak transcription	Pancreas	Pancrea
26	chr4:79385800-79398800	Weak transcription	Aorta	Aorta
27	chr4:79387800-79396000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr4:79388200-79405000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr4:79388600-79397600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr4:79389600-79393600	Strong transcription	Fetal Intestine Large	intestine
31	chr4:79389600-79393800	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr4:79389600-79395000	Strong transcription	H9 Cell Line	embryonic stem cell
33	chr4:79389800-79394200	Strong transcription	HSMMtube	muscle
34	chr4:79391000-79392400	Strong transcription	Left Ventricle	heart
35	chr4:79391000-79392600	Strong transcription	Skeletal Muscle Male	skeletal muscle
36	chr4:79391000-79392800	Strong transcription	Fetal Kidney	kidney
37	chr4:79391000-79393000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr4:79391000-79393200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr4:79391000-79393600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
40	chr4:79391000-79394200	Strong transcription	HepG2	liver
41	chr4:79391000-79405600	Weak transcription	Fetal Heart	heart
42	chr4:79391400-79395800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr4:79391400-79398800	Weak transcription	Fetal Intestine Small	intestine
44	chr4:79391600-79406800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr4:79391800-79393600	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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