Variant report

Variant	rs35389879
Chromosome Location	chr7:21812043-21812044
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11495974	1.00[ASN][1000 genomes]
rs11496011	1.00[ASN][1000 genomes]
rs11761422	0.83[EUR][1000 genomes]
rs11763827	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17357735	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17357951	1.00[ASN][1000 genomes]
rs17358098	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2189021	0.82[EUR][1000 genomes]
rs28434137	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67825435	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6965106	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv470177	chr7:21801125-21817048	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv5656	chr7:21810397-21816672	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21805600-21813800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:21805600-21813800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:21806200-21812400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:21810000-21812800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:21810000-21814000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr7:21810000-21814600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr7:21810200-21813200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr7:21810400-21812400	Bivalent Enhancer	Fetal Brain Male	brain
9	chr7:21810400-21813000	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr7:21810400-21813600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr7:21810600-21813200	Enhancers	Colon Smooth Muscle	Colon
12	chr7:21810600-21813600	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr7:21810800-21812200	Enhancers	Fetal Brain Female	brain
14	chr7:21810800-21812200	Enhancers	Fetal Heart	heart
15	chr7:21810800-21812800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr7:21810800-21814000	Enhancers	Brain Angular Gyrus	brain
17	chr7:21811000-21813400	Enhancers	Brain Cingulate Gyrus	brain
18	chr7:21811200-21812400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr7:21811200-21812600	Enhancers	Fetal Stomach	stomach
20	chr7:21811200-21812800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr7:21811200-21813600	Enhancers	Rectal Smooth Muscle	rectum
22	chr7:21811200-21813800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr7:21811400-21813000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr7:21811400-21813800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr7:21811600-21812200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr7:21811600-21812400	Weak transcription	Brain Germinal Matrix	brain
27	chr7:21811600-21812600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr7:21811600-21812600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr7:21811600-21813200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr7:21811600-21813200	Enhancers	NHEK	skin
31	chr7:21811600-21814200	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr7:21811800-21812200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr7:21811800-21812200	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr7:21811800-21812600	Enhancers	Primary hematopoietic stem cells	blood
35	chr7:21811800-21813200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr7:21811800-21814000	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr7:21812000-21812800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr7:21812000-21813200	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr7:21812000-21814000	Enhancers	Brain Hippocampus Middle	brain
40	chr7:21812000-21814200	Enhancers	Brain Anterior Caudate	brain
41	chr7:21812000-21814200	Enhancers	Brain Substantia Nigra	brain
42	chr7:21812000-21814400	Enhancers	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links