Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:21816268..21818392-chr7:21823306..21824872,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10281087	0.85[CEU][hapmap]
rs11495974	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11496011	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11761026	0.89[CEU][hapmap]
rs11761422	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes]
rs11763827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11764949	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs13243866	1.00[CHB][hapmap]
rs17145146	1.00[JPT][hapmap]
rs17357735	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17357951	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17358098	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2189020	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs2189021	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35389879	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36121046	0.86[EUR][1000 genomes]
rs4722055	0.82[CEU][hapmap]
rs67825435	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6956349	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs6967362	0.87[CEU][hapmap]
rs7781396	1.00[CHB][hapmap]
rs7793481	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21816200-21824400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr7:21822800-21824200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:21823600-21826400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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