Variant report

Variant	rs6956349
Chromosome Location	chr7:21839896-21839897
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11495974	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11496011	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11761422	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11762774	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11763827	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs13243866	1.00[CHB][hapmap]
rs17357735	1.00[CHB][hapmap]
rs17357951	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs17358098	1.00[CHB][hapmap];0.84[GIH][hapmap];0.80[TSI][hapmap]
rs2189021	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.87[GIH][hapmap];0.80[TSI][hapmap];1.00[ASN][1000 genomes]
rs2390594	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs28434137	1.00[ASN][1000 genomes]
rs3735523	0.80[CEU][hapmap]
rs67825435	0.81[EUR][1000 genomes]
rs6946591	0.96[CEU][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6965106	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs7781396	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21834400-21848600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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