Variant report

Variant	rs35391887
Chromosome Location	chr10:60171371-60171372
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:60164775..60168059-chr10:60168344..60171783,3	K562	blood:
2	chr10:60168445..60169965-chr10:60170128..60172307,2	MCF-7	breast:
3	chr10:60170617..60172317-chr10:60174718..60177339,2	K562	blood:
4	chr10:60161796..60163955-chr10:60169528..60171649,2	K562	blood:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs1042192	0.84[AMR][1000 genomes]
rs1042194	0.84[AMR][1000 genomes]
rs10509676	0.84[AMR][1000 genomes]
rs10509679	0.80[ASN][1000 genomes]
rs1074145	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12569735	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12569850	0.80[ASN][1000 genomes]
rs12571421	0.84[AMR][1000 genomes]
rs12571533	0.84[AMR][1000 genomes]
rs12572071	0.80[ASN][1000 genomes]
rs12572085	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12572351	0.80[ASN][1000 genomes]
rs12572499	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs12572588	0.80[ASN][1000 genomes]
rs12572917	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs12573074	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12763230	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12767583	0.82[AMR][1000 genomes]
rs12768009	0.84[AMR][1000 genomes]
rs12768857	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12769205	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs12769684	0.80[ASN][1000 genomes]
rs12772672	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12775283	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12775707	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12778026	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs12778966	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12782374	0.80[ASN][1000 genomes]
rs12783288	0.80[ASN][1000 genomes]
rs12785201	0.80[ASN][1000 genomes]
rs1322179	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1578438	0.80[ASN][1000 genomes]
rs1853205	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2093434	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2181097	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2281890	0.84[AMR][1000 genomes]
rs28399513	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2860903	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34058919	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34121168	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34532201	0.80[ASN][1000 genomes]
rs34607361	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35059536	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35126593	0.80[ASN][1000 genomes]
rs35172334	0.86[AMR][1000 genomes]
rs35390752	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs35406621	0.80[ASN][1000 genomes]
rs35476215	0.87[AFR][1000 genomes]
rs35626865	0.80[ASN][1000 genomes]
rs35709381	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35751085	0.86[AMR][1000 genomes]
rs3758580	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4244285	0.86[AMR][1000 genomes]
rs4417205	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4445573	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4532967	0.86[AMR][1000 genomes]
rs4589212	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4641393	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4986894	0.84[AMR][1000 genomes]
rs56229007	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs58335703	0.86[AMR][1000 genomes]
rs58447435	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs6583954	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs71482318	0.86[AMR][1000 genomes]
rs71482322	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72816654	0.84[AMR][1000 genomes]
rs72818619	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7897904	0.99[EUR][1000 genomes]
rs7910879	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7911008	0.82[EUR][1000 genomes]
rs7911654	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7919524	0.84[AMR][1000 genomes]
rs9332105	0.80[ASN][1000 genomes]
rs9332113	0.80[ASN][1000 genomes]
rs9332140	0.80[ASN][1000 genomes]
rs9332167	0.80[ASN][1000 genomes]
rs9783239	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917219	chr10:59908196-60243021	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:60146000-60174200	Weak transcription	Aorta	Aorta
2	chr10:60149800-60174600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:60155400-60174200	Weak transcription	NHLF	lung
4	chr10:60156200-60174600	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:60156400-60172200	Weak transcription	HepG2	liver
6	chr10:60157800-60171800	Weak transcription	HSMM	muscle
7	chr10:60160600-60173600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr10:60161200-60172000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr10:60168800-60172400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:60170200-60172400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:60171200-60171400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood

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