Variant report
Variant | rs72818619 |
---|---|
Chromosome Location | chr10:96687981-96687982 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10509679 | 0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs1074145 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs12569735 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs12569850 | 0.83[AMR][1000 genomes];0.90[ASN][1000 genomes] |
rs12571421 | 0.83[EUR][1000 genomes] |
rs12572071 | 0.83[AMR][1000 genomes];0.90[ASN][1000 genomes] |
rs12572085 | 0.91[EUR][1000 genomes] |
rs12572351 | 0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs12572373 | 0.87[ASN][1000 genomes] |
rs12572588 | 0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs12573074 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs12763230 | 0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs12767583 | 0.81[EUR][1000 genomes] |
rs12768009 | 0.83[EUR][1000 genomes] |
rs12768857 | 0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs12769205 | 0.83[EUR][1000 genomes] |
rs12769684 | 0.83[AMR][1000 genomes];0.90[ASN][1000 genomes] |
rs12772672 | 0.85[EUR][1000 genomes] |
rs12775283 | 0.93[EUR][1000 genomes] |
rs12775707 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs12778026 | 0.83[EUR][1000 genomes] |
rs12778966 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs12782374 | 0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs12783288 | 0.80[AMR][1000 genomes];0.90[ASN][1000 genomes] |
rs12785201 | 0.90[ASN][1000 genomes] |
rs1322179 | 0.91[EUR][1000 genomes] |
rs1578438 | 0.85[AMR][1000 genomes];0.90[ASN][1000 genomes] |
rs1853205 | 0.91[EUR][1000 genomes] |
rs2093434 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs2181097 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs2298037 | 0.83[AMR][1000 genomes];0.88[ASN][1000 genomes] |
rs28371675 | 0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs28399513 | 0.93[EUR][1000 genomes] |
rs2860903 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs28969381 | 0.85[AMR][1000 genomes];0.87[ASN][1000 genomes] |
rs34058919 | 0.89[EUR][1000 genomes] |
rs34121168 | 0.85[EUR][1000 genomes] |
rs34416068 | 0.83[AMR][1000 genomes];0.86[ASN][1000 genomes] |
rs34532201 | 0.83[AMR][1000 genomes];0.90[ASN][1000 genomes] |
rs34607361 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs35059536 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs35126593 | 0.83[AMR][1000 genomes];0.90[ASN][1000 genomes] |
rs35390752 | 0.83[EUR][1000 genomes] |
rs35391887 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs35406621 | 0.83[AMR][1000 genomes];0.90[ASN][1000 genomes] |
rs35446233 | 0.85[ASN][1000 genomes] |
rs35626865 | 0.85[AMR][1000 genomes];0.90[ASN][1000 genomes] |
rs35709381 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs35751085 | 0.83[EUR][1000 genomes] |
rs3740505 | 0.83[AMR][1000 genomes];0.88[ASN][1000 genomes] |
rs3758580 | 0.93[EUR][1000 genomes] |
rs4244285 | 0.83[EUR][1000 genomes] |
rs4417205 | 0.91[EUR][1000 genomes] |
rs4445573 | 0.91[EUR][1000 genomes] |
rs4589212 | 0.97[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs4641393 | 0.85[EUR][1000 genomes] |
rs4986894 | 0.81[EUR][1000 genomes] |
rs56229007 | 0.85[EUR][1000 genomes] |
rs58447435 | 0.83[EUR][1000 genomes] |
rs6583954 | 0.83[EUR][1000 genomes] |
rs67345186 | 0.88[ASN][1000 genomes] |
rs67892147 | 0.88[ASN][1000 genomes] |
rs71482318 | 0.83[EUR][1000 genomes] |
rs71482322 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs7476934 | 0.83[AMR][1000 genomes];0.88[ASN][1000 genomes] |
rs7897904 | 0.96[EUR][1000 genomes] |
rs7910879 | 0.95[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs7911008 | 0.85[EUR][1000 genomes] |
rs7911654 | 0.93[EUR][1000 genomes] |
rs7919524 | 0.83[EUR][1000 genomes] |
rs9332105 | 0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs9332113 | 0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs9332140 | 0.83[AMR][1000 genomes];0.90[ASN][1000 genomes] |
rs9332167 | 0.83[AMR][1000 genomes];0.90[ASN][1000 genomes] |
rs9332184 | 0.80[AMR][1000 genomes];0.85[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv497859 | chr10:96058024-97027747 | Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
2 | nsv551955 | chr10:96444249-96690371 | Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
3 | nsv1035409 | chr10:96495177-96832057 | Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
4 | esv3529538 | chr10:96522848-96700018 | ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
5 | esv3529539 | chr10:96522848-96700018 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
6 | esv3361914 | chr10:96522865-96700024 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
7 | nsv523259 | chr10:96534584-96693727 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
8 | esv3336672 | chr10:96543010-96711519 | Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
9 | nsv1037973 | chr10:96563228-96711744 | Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
10 | nsv1047782 | chr10:96581094-96718479 | Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
11 | nsv529726 | chr10:96632494-97106315 | Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
12 | nsv551962 | chr10:96680265-96734339 | Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr10:96681400-96695600 | Weak transcription | Fetal Intestine Small | intestine |