Variant report

Variant	rs35392578
Chromosome Location	chr11:10313027-10313028
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10311957..10313803-chr11:10314378..10316867,2	K562	blood:
2	chr11:10312910..10314444-chr11:10314747..10317022,2	MCF-7	breast:
3	chr11:10308479..10310637-chr11:10311551..10314059,2	K562	blood:
4	chr11:10309394..10313803-chr11:10314307..10318397,4	K562	blood:

Variant related genes	Relation type
ENSG00000133812	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs58793550	1.00[EUR][1000 genomes]
rs73412820	1.00[EUR][1000 genomes]
rs73412826	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10290000-10313400	Weak transcription	Fetal Brain Male	brain
2	chr11:10291200-10313600	Weak transcription	NHEK	skin
3	chr11:10291200-10314400	Weak transcription	HSMM	muscle
4	chr11:10298200-10313400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:10299400-10314800	Weak transcription	Small Intestine	intestine
6	chr11:10299800-10314400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:10306400-10313800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr11:10306600-10314400	Weak transcription	Brain Germinal Matrix	brain
9	chr11:10306600-10314800	Weak transcription	Aorta	Aorta
10	chr11:10307000-10313800	Weak transcription	Psoas Muscle	Psoas
11	chr11:10307000-10314400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:10307200-10313400	Weak transcription	Fetal Kidney	kidney
13	chr11:10307200-10313400	Weak transcription	HUVEC	blood vessel
14	chr11:10307200-10313800	Weak transcription	Colon Smooth Muscle	Colon
15	chr11:10307200-10314400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr11:10307400-10313400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:10307400-10313400	Weak transcription	Brain Hippocampus Middle	brain
18	chr11:10307600-10313200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:10307600-10314400	Weak transcription	Primary B cells from cord blood	blood
20	chr11:10307600-10314400	Weak transcription	Brain Angular Gyrus	brain
21	chr11:10307800-10313600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:10307800-10314400	Weak transcription	Liver	Liver
23	chr11:10308200-10314400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr11:10308400-10313800	Weak transcription	Fetal Thymus	thymus
25	chr11:10308400-10314400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr11:10308600-10314400	Weak transcription	NH-A	brain
27	chr11:10308800-10313200	Weak transcription	Fetal Heart	heart
28	chr11:10308800-10313200	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr11:10308800-10314600	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr11:10308800-10315000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr11:10309200-10313400	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr11:10309200-10314400	Weak transcription	Brain Substantia Nigra	brain
33	chr11:10309200-10314400	Weak transcription	HSMMtube	muscle
34	chr11:10309400-10314600	Weak transcription	Thymus	Thymus
35	chr11:10310000-10314800	Weak transcription	Left Ventricle	heart
36	chr11:10310200-10313400	Weak transcription	Fetal Brain Female	brain
37	chr11:10310200-10314400	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr11:10310400-10313600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr11:10310400-10313800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:10310400-10314400	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr11:10310600-10314000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr11:10310600-10314400	Weak transcription	Rectal Smooth Muscle	rectum
43	chr11:10310800-10313400	Weak transcription	Primary hematopoietic stem cells	blood
44	chr11:10310800-10314400	Weak transcription	Colonic Mucosa	Colon
45	chr11:10310800-10314400	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr11:10311200-10313200	Genic enhancers	Fetal Intestine Small	intestine
47	chr11:10311200-10313600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr11:10311200-10314400	Enhancers	Adipose Nuclei	Adipose
49	chr11:10311200-10314400	Enhancers	Fetal Intestine Large	intestine
50	chr11:10311400-10313200	Weak transcription	A549	lung

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