Variant report

Variant	rs73412820
Chromosome Location	chr11:10118854-10118855
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10118222..10120370-chr11:10313905..10316403,2	K562	blood:
2	chr11:10115225..10117024-chr11:10118634..10120787,3	K562	blood:

Variant related genes	Relation type
ENSG00000133812	Chromatin interaction

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs11819811	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11820719	1.00[AMR][1000 genomes]
rs11823001	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11824537	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11824802	1.00[AMR][1000 genomes]
rs11825045	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11825327	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11826708	1.00[AMR][1000 genomes]
rs11827741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11828579	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12362147	1.00[AMR][1000 genomes]
rs16907296	1.00[AMR][1000 genomes]
rs16907298	1.00[AMR][1000 genomes]
rs16907324	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34611271	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35392578	1.00[EUR][1000 genomes]
rs55767227	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55796000	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56013107	1.00[AMR][1000 genomes]
rs56037770	0.89[AFR][1000 genomes]
rs56393596	1.00[AMR][1000 genomes]
rs57197571	1.00[AMR][1000 genomes]
rs57226945	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57245182	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57361167	1.00[AMR][1000 genomes]
rs57428208	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57592322	1.00[AMR][1000 genomes]
rs57616147	1.00[AMR][1000 genomes]
rs57626581	1.00[AMR][1000 genomes]
rs57644762	1.00[AMR][1000 genomes]
rs57663810	1.00[AMR][1000 genomes]
rs57895857	1.00[AMR][1000 genomes]
rs57975192	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58046045	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58417434	1.00[EUR][1000 genomes]
rs58781934	1.00[AMR][1000 genomes]
rs58793550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58810027	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59076108	1.00[AMR][1000 genomes]
rs59107366	1.00[AMR][1000 genomes]
rs59505179	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59869332	1.00[AMR][1000 genomes]
rs60091309	1.00[AMR][1000 genomes]
rs60333011	1.00[AMR][1000 genomes]
rs60837023	1.00[AMR][1000 genomes]
rs61291463	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402444	1.00[AMR][1000 genomes]
rs73402461	1.00[AMR][1000 genomes]
rs73402462	1.00[AMR][1000 genomes]
rs73402490	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73402492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73404502	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406710	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406753	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406756	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408778	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408783	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408800	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408802	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410819	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410823	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410824	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410830	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410837	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410839	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410851	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410858	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410861	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410867	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410875	1.00[AMR][1000 genomes]
rs73410879	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410889	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410898	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412807	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412826	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412842	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412867	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412874	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412879	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412887	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412902	1.00[AMR][1000 genomes]
rs73415005	1.00[AMR][1000 genomes]
rs73415007	1.00[AMR][1000 genomes]
rs73415034	1.00[AMR][1000 genomes]
rs73415036	1.00[AMR][1000 genomes]
rs73415079	0.83[AFR][1000 genomes]
rs73415093	1.00[AMR][1000 genomes]
rs73415101	1.00[AMR][1000 genomes]
rs73416903	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10098600-10121800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:10110400-10121800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:10110400-10122200	Weak transcription	HSMM	muscle
4	chr11:10112000-10119200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:10112400-10122000	Weak transcription	NHLF	lung
6	chr11:10113200-10119200	Weak transcription	Fetal Brain Male	brain
7	chr11:10113400-10119400	Weak transcription	Fetal Lung	lung
8	chr11:10114000-10123200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr11:10114800-10120000	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr11:10116800-10125400	Weak transcription	Ovary	ovary
11	chr11:10116800-10131000	Weak transcription	Gastric	stomach
12	chr11:10117200-10131000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:10117400-10119400	Weak transcription	Aorta	Aorta
14	chr11:10117600-10120600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr11:10117600-10122000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr11:10118200-10121800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:10118200-10125800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr11:10118400-10119000	Enhancers	HUVEC	blood vessel
19	chr11:10118400-10123600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr11:10118600-10119400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr11:10118600-10119800	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr11:10118600-10120000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
23	chr11:10118800-10121800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr11:10118800-10125600	Weak transcription	Pancreas	Pancrea

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