Variant report

Variant	rs73410875
Chromosome Location	chr11:10077831-10077832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10072187..10074484-chr11:10077289..10078994,2	MCF-7	breast:

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs11819811	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11820719	1.00[AMR][1000 genomes]
rs11823001	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11824537	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11824802	1.00[AMR][1000 genomes]
rs11825045	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11825327	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11826708	1.00[AMR][1000 genomes]
rs11827741	1.00[AMR][1000 genomes]
rs11828579	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12362147	1.00[AMR][1000 genomes]
rs16907296	1.00[AMR][1000 genomes]
rs16907298	1.00[AMR][1000 genomes]
rs16907324	1.00[AMR][1000 genomes]
rs34611271	1.00[AMR][1000 genomes]
rs55767227	1.00[AMR][1000 genomes]
rs55796000	1.00[AMR][1000 genomes]
rs56013107	1.00[AMR][1000 genomes]
rs56037770	0.81[AFR][1000 genomes]
rs56393596	1.00[AMR][1000 genomes]
rs57197571	1.00[AMR][1000 genomes]
rs57226945	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57245182	1.00[AMR][1000 genomes]
rs57361167	1.00[AMR][1000 genomes]
rs57428208	1.00[AMR][1000 genomes]
rs57592322	1.00[AMR][1000 genomes]
rs57616147	1.00[AMR][1000 genomes]
rs57626581	1.00[AMR][1000 genomes]
rs57644762	1.00[AMR][1000 genomes]
rs57663810	1.00[AMR][1000 genomes]
rs57895857	1.00[AMR][1000 genomes]
rs57975192	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58046045	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58781934	1.00[AMR][1000 genomes]
rs58793550	1.00[AMR][1000 genomes]
rs58810027	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59076108	1.00[AMR][1000 genomes]
rs59107366	1.00[AMR][1000 genomes]
rs59505179	1.00[AMR][1000 genomes]
rs59869332	1.00[AMR][1000 genomes]
rs60091309	1.00[AMR][1000 genomes]
rs60333011	1.00[AMR][1000 genomes]
rs60837023	1.00[AMR][1000 genomes]
rs61291463	1.00[AMR][1000 genomes]
rs73402444	1.00[AMR][1000 genomes]
rs73402461	1.00[AMR][1000 genomes]
rs73402462	1.00[AMR][1000 genomes]
rs73402490	1.00[AMR][1000 genomes]
rs73402492	1.00[AMR][1000 genomes]
rs73404502	1.00[AMR][1000 genomes]
rs73406710	1.00[AMR][1000 genomes]
rs73406750	1.00[AMR][1000 genomes]
rs73406753	1.00[AMR][1000 genomes]
rs73406756	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408778	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408783	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408800	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408802	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410819	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73410823	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410824	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410830	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410837	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410839	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410851	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73410858	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73410861	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73410867	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73410879	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410889	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410898	1.00[AMR][1000 genomes]
rs73412807	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412810	1.00[AMR][1000 genomes]
rs73412813	1.00[AMR][1000 genomes]
rs73412820	1.00[AMR][1000 genomes]
rs73412826	1.00[AMR][1000 genomes]
rs73412842	1.00[AMR][1000 genomes]
rs73412867	1.00[AMR][1000 genomes]
rs73412871	1.00[AMR][1000 genomes]
rs73412874	1.00[AMR][1000 genomes]
rs73412879	1.00[AMR][1000 genomes]
rs73412887	1.00[AMR][1000 genomes]
rs73412902	1.00[AMR][1000 genomes]
rs73415005	1.00[AMR][1000 genomes]
rs73415007	1.00[AMR][1000 genomes]
rs73415034	1.00[AMR][1000 genomes]
rs73415036	1.00[AMR][1000 genomes]
rs73415093	1.00[AMR][1000 genomes]
rs73415101	1.00[AMR][1000 genomes]
rs73416903	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv553476	chr11:10024311-10117435	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10066600-10078600	Weak transcription	Aorta	Aorta
2	chr11:10067000-10078400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:10067800-10078200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:10072400-10101200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:10074000-10089200	Weak transcription	Ovary	ovary
6	chr11:10074000-10098200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:10074200-10079200	Weak transcription	Osteobl	bone
8	chr11:10074400-10079200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:10075400-10079000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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