Variant report

Variant	rs56037770
Chromosome Location	chr11:10071404-10071405
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11819811	1.00[AFR][1000 genomes]
rs11823001	1.00[AFR][1000 genomes]
rs11824537	1.00[AFR][1000 genomes]
rs11825045	1.00[AFR][1000 genomes]
rs11825327	1.00[AFR][1000 genomes]
rs11827741	0.89[AFR][1000 genomes]
rs11828579	1.00[AFR][1000 genomes]
rs34611271	0.89[AFR][1000 genomes]
rs55767227	0.89[AFR][1000 genomes]
rs57226945	1.00[AFR][1000 genomes]
rs57245182	0.89[AFR][1000 genomes]
rs57975192	1.00[AFR][1000 genomes]
rs58046045	1.00[AFR][1000 genomes]
rs58793550	0.89[AFR][1000 genomes]
rs58810027	1.00[AFR][1000 genomes]
rs60333011	0.89[AFR][1000 genomes]
rs72858879	0.88[EUR][1000 genomes]
rs73404502	0.84[AFR][1000 genomes]
rs73406710	0.84[AFR][1000 genomes]
rs73406739	0.83[AFR][1000 genomes]
rs73406750	0.89[AFR][1000 genomes]
rs73406753	0.89[AFR][1000 genomes]
rs73406756	1.00[AFR][1000 genomes]
rs73408778	1.00[AFR][1000 genomes]
rs73408783	1.00[AFR][1000 genomes]
rs73408800	1.00[AFR][1000 genomes]
rs73408802	1.00[AFR][1000 genomes]
rs73410819	1.00[AFR][1000 genomes]
rs73410823	1.00[AFR][1000 genomes]
rs73410824	1.00[AFR][1000 genomes]
rs73410830	1.00[AFR][1000 genomes]
rs73410837	1.00[AFR][1000 genomes]
rs73410839	1.00[AFR][1000 genomes]
rs73410851	1.00[AFR][1000 genomes]
rs73410858	1.00[AFR][1000 genomes]
rs73410861	1.00[AFR][1000 genomes]
rs73410867	1.00[AFR][1000 genomes]
rs73410875	0.81[AFR][1000 genomes]
rs73410879	1.00[AFR][1000 genomes]
rs73410889	1.00[AFR][1000 genomes]
rs73410898	0.95[AFR][1000 genomes]
rs73412807	1.00[AFR][1000 genomes]
rs73412810	0.89[AFR][1000 genomes]
rs73412813	0.89[AFR][1000 genomes]
rs73412820	0.89[AFR][1000 genomes]
rs73412871	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv553476	chr11:10024311-10117435	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10066600-10073600	Weak transcription	NHLF	lung
2	chr11:10066600-10073800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:10066600-10078600	Weak transcription	Aorta	Aorta
4	chr11:10066800-10072000	Weak transcription	Osteobl	bone
5	chr11:10066800-10073600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:10067000-10078400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:10067800-10071800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:10067800-10072200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:10067800-10078200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:10068200-10073600	Weak transcription	Fetal Lung	lung
11	chr11:10069000-10074400	Enhancers	Hela-S3	cervix
12	chr11:10069800-10071800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:10070600-10071800	Enhancers	Primary hematopoietic stem cells	blood
14	chr11:10071200-10072000	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr11:10071200-10073600	Weak transcription	Ovary	ovary
16	chr11:10071400-10071600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr11:10071400-10074200	Enhancers	HepG2	liver
18	chr11:10071400-10074600	Enhancers	A549	lung

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