Variant report
Variant | rs11819811 |
---|---|
Chromosome Location | chr11:10084833-10084834 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11820719 | 1.00[AMR][1000 genomes] |
rs11823001 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs11824537 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs11824802 | 1.00[AMR][1000 genomes] |
rs11825045 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs11825327 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs11826708 | 1.00[AMR][1000 genomes] |
rs11827741 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs11828579 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs12362147 | 1.00[AMR][1000 genomes] |
rs16907296 | 1.00[AMR][1000 genomes] |
rs16907298 | 1.00[AMR][1000 genomes] |
rs16907324 | 1.00[AMR][1000 genomes] |
rs34611271 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs55767227 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs55796000 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs56013107 | 1.00[AMR][1000 genomes] |
rs56037770 | 1.00[AFR][1000 genomes] |
rs56393596 | 1.00[AMR][1000 genomes] |
rs56832220 | 1.00[EUR][1000 genomes] |
rs57197571 | 1.00[AMR][1000 genomes] |
rs57226945 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs57245182 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs57361167 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs57428208 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs57592322 | 1.00[AMR][1000 genomes] |
rs57616147 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs57626581 | 1.00[AMR][1000 genomes] |
rs57644762 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs57663810 | 1.00[AMR][1000 genomes] |
rs57895857 | 1.00[AMR][1000 genomes] |
rs57975192 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs58046045 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs58781934 | 1.00[AMR][1000 genomes] |
rs58793550 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs58810027 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs58982478 | 1.00[EUR][1000 genomes] |
rs59076108 | 1.00[AMR][1000 genomes] |
rs59107366 | 1.00[AMR][1000 genomes] |
rs59505179 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs59705993 | 1.00[EUR][1000 genomes] |
rs59869332 | 1.00[AMR][1000 genomes] |
rs60091309 | 1.00[AMR][1000 genomes] |
rs60333011 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs60837023 | 1.00[AMR][1000 genomes] |
rs60846119 | 1.00[EUR][1000 genomes] |
rs61034877 | 1.00[EUR][1000 genomes] |
rs61291463 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73402444 | 1.00[AMR][1000 genomes] |
rs73402461 | 1.00[AMR][1000 genomes] |
rs73402462 | 1.00[AMR][1000 genomes] |
rs73402490 | 1.00[AMR][1000 genomes] |
rs73402492 | 1.00[AMR][1000 genomes] |
rs73404502 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73406710 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73406739 | 0.83[AFR][1000 genomes] |
rs73406750 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73406753 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73406756 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73408778 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73408783 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73408800 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73408802 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73410819 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73410823 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73410824 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73410830 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73410837 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73410839 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73410851 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73410858 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73410861 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73410867 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73410875 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73410879 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73410889 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73410898 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73412807 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73412810 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73412813 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73412820 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73412826 | 1.00[AMR][1000 genomes] |
rs73412842 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73412867 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73412871 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73412874 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73412879 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73412887 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73412902 | 1.00[AMR][1000 genomes] |
rs73415005 | 1.00[AMR][1000 genomes] |
rs73415007 | 1.00[AMR][1000 genomes] |
rs73415034 | 1.00[AMR][1000 genomes] |
rs73415036 | 1.00[AMR][1000 genomes] |
rs73415072 | 1.00[EUR][1000 genomes] |
rs73415076 | 1.00[EUR][1000 genomes] |
rs73415093 | 1.00[AMR][1000 genomes] |
rs73415101 | 1.00[AMR][1000 genomes] |
rs73416903 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73419140 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv933855 | chr11:9645441-10130519 | Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 40 gene(s) | inside rSNPs | diseases |
2 | nsv553476 | chr11:10024311-10117435 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
3 | nsv430319 | chr11:10027543-10711224 | Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 75 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:10072400-10101200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
2 | chr11:10074000-10089200 | Weak transcription | Ovary | ovary |
3 | chr11:10074000-10098200 | Weak transcription | Foreskin Fibroblast Primary Cells skin02 | Skin |
4 | chr11:10084600-10088000 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |