Variant report

Variant	rs60846119
Chromosome Location	chr11:10280484-10280485
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs11819811	1.00[EUR][1000 genomes]
rs11819840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11820224	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11821006	1.00[AFR][1000 genomes]
rs11824082	1.00[AFR][1000 genomes]
rs11825257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34858937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55638035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55796000	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55923449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55962722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56013107	1.00[AFR][1000 genomes]
rs56342948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56832220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56875307	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57197571	1.00[AFR][1000 genomes]
rs57349511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57361167	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57428208	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57458435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57616147	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57626581	1.00[AFR][1000 genomes]
rs57644762	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57895857	0.95[AFR][1000 genomes]
rs59076108	1.00[AFR][1000 genomes]
rs59079092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59107366	0.95[AFR][1000 genomes]
rs59476140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59489558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59505179	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59705993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59869332	1.00[AFR][1000 genomes]
rs60161297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60837023	1.00[AFR][1000 genomes]
rs60974477	1.00[AFR][1000 genomes]
rs61034877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61291463	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61421359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410889	1.00[EUR][1000 genomes]
rs73410898	1.00[EUR][1000 genomes]
rs73412842	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73412867	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73412871	1.00[EUR][1000 genomes]
rs73412874	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73412879	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73412887	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73412902	0.95[AFR][1000 genomes]
rs73415005	0.95[AFR][1000 genomes]
rs73415007	0.86[AFR][1000 genomes]
rs73415034	1.00[AFR][1000 genomes]
rs73415036	1.00[AFR][1000 genomes]
rs73415065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73415076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73415079	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415093	1.00[AFR][1000 genomes]
rs73415101	1.00[AFR][1000 genomes]
rs73416903	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73419140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73420920	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73420925	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10264600-10280800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:10264800-10282800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:10268600-10300000	Weak transcription	Fetal Intestine Small	intestine
4	chr11:10269800-10283000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:10273800-10280800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr11:10277400-10281200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr11:10277600-10280800	Weak transcription	NHLF	lung
8	chr11:10277600-10283000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr11:10277600-10283000	Weak transcription	HUVEC	blood vessel
10	chr11:10277600-10292000	Weak transcription	Aorta	Aorta
11	chr11:10278000-10282800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr11:10278000-10283200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr11:10278200-10283000	Weak transcription	HSMM	muscle
14	chr11:10278200-10295200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr11:10278200-10309200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:10278600-10280600	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr11:10278800-10283000	Weak transcription	Osteobl	bone
18	chr11:10279000-10283000	Weak transcription	NHDF-Ad	bronchial
19	chr11:10279000-10283400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:10279000-10311400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr11:10279400-10280600	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr11:10279400-10296600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr11:10279600-10280800	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr11:10279800-10280800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:10279800-10282800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr11:10279800-10287800	Weak transcription	Left Ventricle	heart
27	chr11:10280000-10281200	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr11:10280200-10280600	Enhancers	Ovary	ovary
29	chr11:10280200-10280800	Enhancers	HepG2	liver
30	chr11:10280200-10281000	Enhancers	A549	lung
31	chr11:10280400-10280600	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr11:10280400-10280600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr11:10280400-10281000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:10280400-10281000	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr11:10280400-10281000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr11:10280400-10281200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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