Variant report

Variant	rs11821006
Chromosome Location	chr11:10219886-10219887
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr11:10219838-10220120	U2OS	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10219263..10222663-chr11:10324916..10328525,3	MCF-7	breast:

Variant related genes	Relation type
SBF2	TF binding region
ENSG00000254554	Chromatin interaction
ENSG00000148926	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs11819840	1.00[AFR][1000 genomes]
rs11820224	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11824082	1.00[AFR][1000 genomes]
rs11825045	1.00[YRI][hapmap]
rs11825257	1.00[AFR][1000 genomes]
rs11827387	1.00[AMR][1000 genomes]
rs34858937	1.00[AFR][1000 genomes]
rs55638035	1.00[AFR][1000 genomes]
rs55777552	1.00[AMR][1000 genomes]
rs55796000	0.85[AFR][1000 genomes]
rs55923449	1.00[AFR][1000 genomes]
rs55962722	1.00[AFR][1000 genomes]
rs56013107	1.00[AFR][1000 genomes]
rs56342948	1.00[AFR][1000 genomes]
rs56832220	1.00[AFR][1000 genomes]
rs56875307	0.90[AFR][1000 genomes]
rs57197571	1.00[AFR][1000 genomes]
rs57349511	1.00[AFR][1000 genomes]
rs57361167	1.00[AFR][1000 genomes]
rs57428208	0.85[AFR][1000 genomes]
rs57458435	1.00[AFR][1000 genomes]
rs57616147	1.00[AFR][1000 genomes]
rs57626581	1.00[AFR][1000 genomes]
rs57644762	1.00[AFR][1000 genomes]
rs57895857	0.95[AFR][1000 genomes]
rs59076108	1.00[AFR][1000 genomes]
rs59079092	1.00[AFR][1000 genomes]
rs59107366	0.95[AFR][1000 genomes]
rs59476140	1.00[AFR][1000 genomes]
rs59489558	1.00[AFR][1000 genomes]
rs59505179	0.85[AFR][1000 genomes]
rs59705993	1.00[AFR][1000 genomes]
rs59869332	1.00[AFR][1000 genomes]
rs60161297	1.00[AFR][1000 genomes]
rs60837023	1.00[AFR][1000 genomes]
rs60846119	1.00[AFR][1000 genomes]
rs60974477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61034877	1.00[AFR][1000 genomes]
rs61291463	0.85[AFR][1000 genomes]
rs61421359	1.00[AFR][1000 genomes]
rs73403904	1.00[AMR][1000 genomes]
rs73403928	1.00[AMR][1000 genomes]
rs73403936	1.00[AMR][1000 genomes]
rs73403938	1.00[AMR][1000 genomes]
rs73412842	0.85[AFR][1000 genomes]
rs73412867	0.85[AFR][1000 genomes]
rs73412874	0.85[AFR][1000 genomes]
rs73412879	0.85[AFR][1000 genomes]
rs73412887	0.85[AFR][1000 genomes]
rs73412902	0.95[AFR][1000 genomes]
rs73415005	0.95[AFR][1000 genomes]
rs73415007	0.86[AFR][1000 genomes]
rs73415034	1.00[AFR][1000 genomes]
rs73415036	1.00[AFR][1000 genomes]
rs73415065	1.00[AFR][1000 genomes]
rs73415071	1.00[AFR][1000 genomes]
rs73415072	1.00[AFR][1000 genomes]
rs73415076	1.00[AFR][1000 genomes]
rs73415079	0.89[AFR][1000 genomes]
rs73415080	1.00[AFR][1000 genomes]
rs73415081	1.00[AFR][1000 genomes]
rs73415082	1.00[AFR][1000 genomes]
rs73415093	1.00[AFR][1000 genomes]
rs73415101	1.00[AFR][1000 genomes]
rs73416903	1.00[AFR][1000 genomes]
rs73419140	1.00[AFR][1000 genomes]
rs73419172	1.00[AFR][1000 genomes]
rs73420920	0.89[AFR][1000 genomes]
rs73420932	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10188000-10222800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:10203600-10220000	Weak transcription	NH-A	brain
3	chr11:10203800-10223800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr11:10205800-10220600	Weak transcription	A549	lung
5	chr11:10208000-10229000	Weak transcription	Aorta	Aorta
6	chr11:10208800-10229400	Weak transcription	NHLF	lung
7	chr11:10209000-10223200	Weak transcription	Left Ventricle	heart
8	chr11:10211000-10224600	Weak transcription	Primary B cells from cord blood	blood
9	chr11:10213600-10224400	Weak transcription	Hela-S3	cervix
10	chr11:10214000-10224800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:10214200-10225200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr11:10214800-10224400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr11:10215000-10226200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:10215600-10224400	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr11:10219000-10220400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr11:10219000-10242200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:10219200-10221200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr11:10219200-10222600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:10219600-10220600	Weak transcription	NHDF-Ad	bronchial
20	chr11:10219800-10222800	Weak transcription	Osteobl	bone
21	chr11:10219800-10226400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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