Variant report

Variant	rs73420920
Chromosome Location	chr11:10306329-10306330
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10305502..10307522-chr11:10309769..10312010,2	K562	blood:
2	chr11:10303426..10307423-chr11:10327783..10331801,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133805	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11819840	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11820224	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11821006	0.89[AFR][1000 genomes]
rs11824082	0.89[AFR][1000 genomes]
rs11825257	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34858937	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55638035	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55923449	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55962722	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56013107	0.89[AFR][1000 genomes]
rs56342948	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56832220	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56875307	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57197571	0.89[AFR][1000 genomes]
rs57349511	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57361167	0.89[AFR][1000 genomes]
rs57458435	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57616147	0.89[AFR][1000 genomes]
rs57626581	0.89[AFR][1000 genomes]
rs57644762	0.89[AFR][1000 genomes]
rs57895857	0.85[AFR][1000 genomes]
rs59076108	0.89[AFR][1000 genomes]
rs59079092	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59107366	0.85[AFR][1000 genomes]
rs59476140	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59489558	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59705993	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59869332	0.89[AFR][1000 genomes]
rs60161297	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60837023	0.89[AFR][1000 genomes]
rs60846119	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60974477	0.89[AFR][1000 genomes]
rs61034877	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61421359	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73403904	0.89[AFR][1000 genomes]
rs73412902	0.85[AFR][1000 genomes]
rs73415005	0.85[AFR][1000 genomes]
rs73415034	0.89[AFR][1000 genomes]
rs73415036	0.89[AFR][1000 genomes]
rs73415065	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415071	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415072	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415076	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415079	1.00[AMR][1000 genomes]
rs73415080	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415081	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415082	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415093	0.89[AFR][1000 genomes]
rs73415101	0.89[AFR][1000 genomes]
rs73416903	0.89[AFR][1000 genomes]
rs73419140	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73419172	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73420925	1.00[AMR][1000 genomes]
rs73420932	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10278200-10309200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:10279000-10311400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr11:10290000-10313400	Weak transcription	Fetal Brain Male	brain
4	chr11:10290800-10309000	Weak transcription	HSMMtube	muscle
5	chr11:10291200-10313600	Weak transcription	NHEK	skin
6	chr11:10291200-10314400	Weak transcription	HSMM	muscle
7	chr11:10291400-10309000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr11:10294200-10309600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:10294200-10311400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr11:10295600-10306600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:10295600-10307000	Weak transcription	Colon Smooth Muscle	Colon
12	chr11:10296800-10306600	Weak transcription	NHDF-Ad	bronchial
13	chr11:10297000-10309600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr11:10297800-10309400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:10298200-10307000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:10298200-10313400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:10299400-10308600	Weak transcription	NHLF	lung
18	chr11:10299400-10314800	Weak transcription	Small Intestine	intestine
19	chr11:10299600-10310400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:10299800-10314400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:10303400-10306600	Enhancers	Liver	Liver
22	chr11:10304000-10306800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr11:10304000-10312400	Weak transcription	Duodenum Mucosa	Duodenum
24	chr11:10304600-10307600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr11:10304800-10308800	Weak transcription	Fetal Intestine Large	intestine
26	chr11:10304800-10308800	Weak transcription	Fetal Intestine Small	intestine
27	chr11:10304800-10308800	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr11:10305000-10308400	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr11:10305200-10306800	Weak transcription	Hela-S3	cervix
30	chr11:10305400-10306600	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr11:10305600-10307600	Enhancers	Adipose Nuclei	Adipose
32	chr11:10305800-10306400	Enhancers	Right Ventricle	heart
33	chr11:10305800-10307800	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr11:10306000-10306400	Enhancers	Stomach Mucosa	stomach
35	chr11:10306000-10306600	Enhancers	A549	lung
36	chr11:10306000-10307800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr11:10306000-10307800	Enhancers	HepG2	liver
38	chr11:10306200-10306400	Enhancers	Primary B cells from cord blood	blood
39	chr11:10306200-10306400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr11:10306200-10306600	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr11:10306200-10306800	Enhancers	Ovary	ovary
42	chr11:10306200-10307000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr11:10306200-10307000	Enhancers	Psoas Muscle	Psoas
44	chr11:10306200-10307000	Enhancers	Right Atrium	heart
45	chr11:10306200-10307400	Enhancers	H9 Cell Line	embryonic stem cell
46	chr11:10306200-10307400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr11:10306200-10307800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr11:10306200-10307800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
49	chr11:10306200-10309400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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