Variant report

Variant	rs73415076
Chromosome Location	chr11:10214194-10214195
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs11819811	1.00[EUR][1000 genomes]
rs11819840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11820224	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11821006	1.00[AFR][1000 genomes]
rs11824082	1.00[AFR][1000 genomes]
rs11825257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34858937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55638035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55796000	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55923449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55962722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56013107	1.00[AFR][1000 genomes]
rs56342948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56832220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56875307	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57197571	1.00[AFR][1000 genomes]
rs57349511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57361167	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57428208	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57458435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57616147	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57626581	1.00[AFR][1000 genomes]
rs57644762	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57895857	0.95[AFR][1000 genomes]
rs59076108	1.00[AFR][1000 genomes]
rs59079092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59107366	0.95[AFR][1000 genomes]
rs59476140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59489558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59505179	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59705993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59869332	1.00[AFR][1000 genomes]
rs60161297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60837023	1.00[AFR][1000 genomes]
rs60846119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60974477	1.00[AFR][1000 genomes]
rs61034877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61291463	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61421359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410889	1.00[EUR][1000 genomes]
rs73410898	1.00[EUR][1000 genomes]
rs73412842	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73412867	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73412871	1.00[EUR][1000 genomes]
rs73412874	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73412879	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73412887	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73412902	0.95[AFR][1000 genomes]
rs73415005	0.95[AFR][1000 genomes]
rs73415007	0.86[AFR][1000 genomes]
rs73415034	1.00[AFR][1000 genomes]
rs73415036	1.00[AFR][1000 genomes]
rs73415065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73415079	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415093	1.00[AFR][1000 genomes]
rs73415101	1.00[AFR][1000 genomes]
rs73416903	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73419140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73420920	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73420925	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10188000-10222800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:10202400-10216000	Weak transcription	Fetal Intestine Small	intestine
3	chr11:10203600-10215600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:10203600-10220000	Weak transcription	NH-A	brain
5	chr11:10203800-10223800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr11:10204400-10217200	Weak transcription	Fetal Intestine Large	intestine
7	chr11:10204600-10217000	Weak transcription	Placenta	Placenta
8	chr11:10205400-10214200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:10205600-10217000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:10205800-10220600	Weak transcription	A549	lung
11	chr11:10206200-10216600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr11:10207400-10216200	Weak transcription	Adipose Nuclei	Adipose
13	chr11:10207400-10216600	Weak transcription	Fetal Lung	lung
14	chr11:10207800-10218600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr11:10208000-10229000	Weak transcription	Aorta	Aorta
16	chr11:10208400-10216600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr11:10208400-10217200	Weak transcription	HSMM	muscle
18	chr11:10208800-10218600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:10208800-10229400	Weak transcription	NHLF	lung
20	chr11:10209000-10215600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr11:10209000-10223200	Weak transcription	Left Ventricle	heart
22	chr11:10209400-10219000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr11:10209600-10214200	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr11:10210000-10219000	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr11:10210600-10216200	Weak transcription	HepG2	liver
26	chr11:10211000-10224600	Weak transcription	Primary B cells from cord blood	blood
27	chr11:10211800-10215200	Weak transcription	Liver	Liver
28	chr11:10211800-10215600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr11:10211800-10216600	Weak transcription	HUVEC	blood vessel
30	chr11:10212600-10215000	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr11:10213000-10214200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:10213200-10214400	Genic enhancers	NHDF-Ad	bronchial
33	chr11:10213200-10214400	Enhancers	Osteobl	bone
34	chr11:10213200-10214800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:10213400-10215600	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr11:10213400-10215800	Weak transcription	Brain Angular Gyrus	brain
37	chr11:10213400-10216600	Weak transcription	Fetal Muscle Trunk	muscle
38	chr11:10213600-10214200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
39	chr11:10213600-10214200	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr11:10213600-10224400	Weak transcription	Hela-S3	cervix
41	chr11:10213800-10214400	Strong transcription	Primary T cells from cord blood	blood
42	chr11:10213800-10214600	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr11:10213800-10214600	Enhancers	Stomach Mucosa	stomach
44	chr11:10213800-10215000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr11:10213800-10216200	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr11:10213800-10218800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr11:10214000-10216400	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr11:10214000-10218600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr11:10214000-10219400	Weak transcription	Ovary	ovary
50	chr11:10214000-10224800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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