Variant report

Variant	rs57428208
Chromosome Location	chr11:10167286-10167287
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 126 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs11819811	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11819840	0.85[AFR][1000 genomes]
rs11820224	0.85[AFR][1000 genomes]
rs11820719	1.00[AMR][1000 genomes]
rs11821006	0.85[AFR][1000 genomes]
rs11823001	1.00[AMR][1000 genomes]
rs11824082	0.85[AFR][1000 genomes]
rs11824537	1.00[AMR][1000 genomes]
rs11824802	1.00[AMR][1000 genomes]
rs11825045	1.00[AMR][1000 genomes]
rs11825257	0.85[AFR][1000 genomes]
rs11825327	1.00[AMR][1000 genomes]
rs11826708	1.00[AMR][1000 genomes]
rs11827741	1.00[AMR][1000 genomes]
rs11828579	1.00[AMR][1000 genomes]
rs12362147	1.00[AMR][1000 genomes]
rs16907296	1.00[AMR][1000 genomes]
rs16907298	1.00[AMR][1000 genomes]
rs16907324	1.00[AMR][1000 genomes]
rs34611271	1.00[AMR][1000 genomes]
rs34858937	0.85[AFR][1000 genomes]
rs4698	1.00[AMR][1000 genomes]
rs55638035	0.85[AFR][1000 genomes]
rs55767227	1.00[AMR][1000 genomes]
rs55796000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55923449	0.85[AFR][1000 genomes]
rs55962722	0.85[AFR][1000 genomes]
rs56013107	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56342948	0.85[AFR][1000 genomes]
rs56393596	1.00[AMR][1000 genomes]
rs56832220	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56962991	1.00[AMR][1000 genomes]
rs57197571	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57226945	1.00[AMR][1000 genomes]
rs57245182	1.00[AMR][1000 genomes]
rs57349511	0.85[AFR][1000 genomes]
rs57361167	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57458435	0.85[AFR][1000 genomes]
rs57592322	1.00[AMR][1000 genomes]
rs57616147	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57626581	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57644762	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57663810	1.00[AMR][1000 genomes]
rs57895857	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57975192	1.00[AMR][1000 genomes]
rs58046045	1.00[AMR][1000 genomes]
rs58781934	1.00[AMR][1000 genomes]
rs58793550	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58810027	1.00[AMR][1000 genomes]
rs59076108	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59079092	0.85[AFR][1000 genomes]
rs59107366	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59168644	1.00[AMR][1000 genomes]
rs59476140	0.85[AFR][1000 genomes]
rs59489558	0.85[AFR][1000 genomes]
rs59505179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59705993	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59869332	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60161297	0.85[AFR][1000 genomes]
rs60333011	1.00[AMR][1000 genomes]
rs60837023	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60846119	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60974477	0.85[AFR][1000 genomes]
rs61034877	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61291463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61421359	0.85[AFR][1000 genomes]
rs73402444	1.00[AMR][1000 genomes]
rs73402461	1.00[AMR][1000 genomes]
rs73402462	1.00[AMR][1000 genomes]
rs73402490	1.00[AMR][1000 genomes]
rs73402492	1.00[AMR][1000 genomes]
rs73403912	1.00[AMR][1000 genomes]
rs73404502	1.00[AMR][1000 genomes]
rs73406710	1.00[AMR][1000 genomes]
rs73406750	1.00[AMR][1000 genomes]
rs73406753	1.00[AMR][1000 genomes]
rs73406756	1.00[AMR][1000 genomes]
rs73408778	1.00[AMR][1000 genomes]
rs73408783	1.00[AMR][1000 genomes]
rs73408800	1.00[AMR][1000 genomes]
rs73408802	1.00[AMR][1000 genomes]
rs73410819	1.00[AMR][1000 genomes]
rs73410823	1.00[AMR][1000 genomes]
rs73410824	1.00[AMR][1000 genomes]
rs73410830	1.00[AMR][1000 genomes]
rs73410837	1.00[AMR][1000 genomes]
rs73410839	1.00[AMR][1000 genomes]
rs73410851	1.00[AMR][1000 genomes]
rs73410858	1.00[AMR][1000 genomes]
rs73410861	1.00[AMR][1000 genomes]
rs73410867	1.00[AMR][1000 genomes]
rs73410875	1.00[AMR][1000 genomes]
rs73410879	1.00[AMR][1000 genomes]
rs73410889	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73410898	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412807	1.00[AMR][1000 genomes]
rs73412810	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412813	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412820	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412826	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412871	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412902	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415005	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415007	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415034	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415036	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415065	0.85[AFR][1000 genomes]
rs73415071	0.85[AFR][1000 genomes]
rs73415072	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73415076	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73415080	0.85[AFR][1000 genomes]
rs73415081	0.85[AFR][1000 genomes]
rs73415082	0.85[AFR][1000 genomes]
rs73415093	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415101	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73416903	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419140	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73419172	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1036041	chr11:10131018-10212202	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10144800-10170400	Weak transcription	Left Ventricle	heart
2	chr11:10156800-10168800	Weak transcription	Fetal Lung	lung
3	chr11:10157000-10177400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:10162400-10177400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:10162400-10177800	Weak transcription	NHLF	lung
6	chr11:10163000-10168600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:10166800-10177600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:10167200-10168000	Enhancers	Ovary	ovary

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