Variant report

Variant	rs11827741
Chromosome Location	chr11:10004395-10004396
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs11819811	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11820719	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11823001	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11824537	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11824802	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11825045	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11825327	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11826708	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11828579	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12362147	1.00[AMR][1000 genomes]
rs16907296	1.00[AMR][1000 genomes]
rs16907298	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16907324	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34611271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55767227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55796000	1.00[AMR][1000 genomes]
rs56013107	1.00[AMR][1000 genomes]
rs56037770	0.89[AFR][1000 genomes]
rs56393596	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57197571	1.00[AMR][1000 genomes]
rs57226945	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57245182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57428208	1.00[AMR][1000 genomes]
rs57592322	1.00[AMR][1000 genomes]
rs57626581	1.00[AMR][1000 genomes]
rs57663810	1.00[AMR][1000 genomes]
rs57975192	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58046045	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58417434	1.00[EUR][1000 genomes]
rs58781934	1.00[AMR][1000 genomes]
rs58793550	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58810027	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59076108	1.00[AMR][1000 genomes]
rs59107366	1.00[AMR][1000 genomes]
rs59505179	1.00[AMR][1000 genomes]
rs60091309	1.00[AMR][1000 genomes]
rs60333011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61291463	1.00[AMR][1000 genomes]
rs73402444	1.00[AMR][1000 genomes]
rs73402461	1.00[AMR][1000 genomes]
rs73402462	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73402490	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73402492	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73404502	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406710	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406739	0.94[AFR][1000 genomes]
rs73406750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406756	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408778	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408783	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408800	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408802	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410819	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410823	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410824	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410830	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410837	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410839	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410851	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410858	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410861	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410867	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410875	1.00[AMR][1000 genomes]
rs73410879	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410889	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410898	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412807	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412810	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412813	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412820	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412826	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412842	1.00[AMR][1000 genomes]
rs73412867	1.00[AMR][1000 genomes]
rs73412871	1.00[AMR][1000 genomes]
rs73412874	1.00[AMR][1000 genomes]
rs73412879	1.00[AMR][1000 genomes]
rs73412887	1.00[AMR][1000 genomes]
rs73412902	1.00[AMR][1000 genomes]
rs73415005	1.00[AMR][1000 genomes]
rs73415007	1.00[AMR][1000 genomes]
rs73415034	1.00[AMR][1000 genomes]
rs73415036	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv896988	chr11:9912052-10012511	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv896989	chr11:9951968-10059623	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	esv1819684	chr11:9973062-10012511	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9973800-10010600	Weak transcription	Fetal Brain Male	brain
2	chr11:9981000-10020000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:9981200-10009200	Weak transcription	Brain Germinal Matrix	brain
4	chr11:9981400-10004400	Weak transcription	HepG2	liver
5	chr11:9981400-10008800	Weak transcription	Primary T cells from cord blood	blood
6	chr11:9981400-10010200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:9981400-10014800	Weak transcription	Dnd41	blood
8	chr11:9981400-10017000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr11:9981400-10051600	Weak transcription	Aorta	Aorta
10	chr11:9981800-10004800	Weak transcription	Ovary	ovary
11	chr11:9983600-10004800	Weak transcription	Fetal Lung	lung
12	chr11:9983600-10023200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr11:9984600-10010200	Weak transcription	Fetal Kidney	kidney
14	chr11:9985800-10004400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr11:9985800-10021600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr11:9985800-10023600	Weak transcription	Primary B cells from cord blood	blood
17	chr11:9985800-10049000	Weak transcription	Left Ventricle	heart
18	chr11:9986000-10006000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:9990000-10004800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:9990000-10012600	Weak transcription	Liver	Liver
21	chr11:9990000-10018200	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr11:9990200-10006200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:9990400-10028200	Weak transcription	Fetal Brain Female	brain
24	chr11:9991200-10060000	Weak transcription	Colon Smooth Muscle	Colon
25	chr11:9994800-10041800	Weak transcription	Rectal Smooth Muscle	rectum
26	chr11:9995000-10008800	Weak transcription	Primary B cells from peripheral blood	blood
27	chr11:9996000-10024600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr11:9999600-10010200	Weak transcription	Adipose Nuclei	Adipose
29	chr11:9999600-10019800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr11:9999800-10009800	Weak transcription	Primary hematopoietic stem cells	blood
31	chr11:9999800-10024000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr11:9999800-10024200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr11:10000800-10004600	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr11:10001400-10066200	Weak transcription	Pancreas	Pancrea
35	chr11:10002200-10005000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr11:10002400-10004800	Enhancers	HSMM	muscle
37	chr11:10002400-10006200	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr11:10002600-10004400	Enhancers	HSMMtube	muscle
39	chr11:10002600-10004800	Enhancers	HUVEC	blood vessel
40	chr11:10002600-10005200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr11:10002600-10005600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr11:10002800-10016000	Weak transcription	Colonic Mucosa	Colon
43	chr11:10003000-10004600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr11:10003200-10005600	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr11:10003400-10004400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr11:10003400-10004400	Enhancers	NHLF	lung
47	chr11:10003400-10004600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr11:10003400-10004600	Enhancers	Brain Inferior Temporal Lobe	brain
49	chr11:10003400-10004600	Enhancers	Brain Substantia Nigra	brain
50	chr11:10003400-10004800	Flanking Active TSS	A549	lung

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