Variant report

Variant	rs73410889
Chromosome Location	chr11:10087643-10087644
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs11819811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11820719	1.00[AMR][1000 genomes]
rs11823001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11824537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11824802	1.00[AMR][1000 genomes]
rs11825045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11825327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11826708	1.00[AMR][1000 genomes]
rs11827741	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11828579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12362147	1.00[AMR][1000 genomes]
rs16907296	1.00[AMR][1000 genomes]
rs16907298	1.00[AMR][1000 genomes]
rs16907324	1.00[AMR][1000 genomes]
rs34611271	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55767227	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55796000	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56013107	1.00[AMR][1000 genomes]
rs56037770	1.00[AFR][1000 genomes]
rs56393596	1.00[AMR][1000 genomes]
rs56832220	1.00[EUR][1000 genomes]
rs57197571	1.00[AMR][1000 genomes]
rs57226945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57245182	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57361167	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57428208	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57592322	1.00[AMR][1000 genomes]
rs57616147	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57626581	1.00[AMR][1000 genomes]
rs57644762	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57663810	1.00[AMR][1000 genomes]
rs57895857	1.00[AMR][1000 genomes]
rs57975192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58046045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58781934	1.00[AMR][1000 genomes]
rs58793550	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58810027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58982478	1.00[EUR][1000 genomes]
rs59076108	1.00[AMR][1000 genomes]
rs59107366	1.00[AMR][1000 genomes]
rs59505179	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59705993	1.00[EUR][1000 genomes]
rs59869332	1.00[AMR][1000 genomes]
rs60091309	1.00[AMR][1000 genomes]
rs60333011	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60837023	1.00[AMR][1000 genomes]
rs60846119	1.00[EUR][1000 genomes]
rs61034877	1.00[EUR][1000 genomes]
rs61291463	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73402444	1.00[AMR][1000 genomes]
rs73402461	1.00[AMR][1000 genomes]
rs73402462	1.00[AMR][1000 genomes]
rs73402490	1.00[AMR][1000 genomes]
rs73402492	1.00[AMR][1000 genomes]
rs73404502	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406710	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406739	0.83[AFR][1000 genomes]
rs73406750	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406753	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408800	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410875	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410898	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412810	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412813	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412820	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412826	1.00[AMR][1000 genomes]
rs73412842	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412867	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412871	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412874	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412879	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412887	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412902	1.00[AMR][1000 genomes]
rs73415005	1.00[AMR][1000 genomes]
rs73415007	1.00[AMR][1000 genomes]
rs73415034	1.00[AMR][1000 genomes]
rs73415036	1.00[AMR][1000 genomes]
rs73415072	1.00[EUR][1000 genomes]
rs73415076	1.00[EUR][1000 genomes]
rs73415093	1.00[AMR][1000 genomes]
rs73415101	1.00[AMR][1000 genomes]
rs73416903	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73419140	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv553476	chr11:10024311-10117435	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10072400-10101200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:10074000-10089200	Weak transcription	Ovary	ovary
3	chr11:10074000-10098200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr11:10084600-10088000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr11:10085000-10098200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:10086600-10088200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr11:10087600-10089600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:10087600-10090000	Enhancers	A549	lung
9	chr11:10087600-10090600	Enhancers	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links