Variant report

Variant	rs73415034
Chromosome Location	chr11:10189410-10189411
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs11819811	1.00[AMR][1000 genomes]
rs11819840	1.00[AFR][1000 genomes]
rs11820224	1.00[AFR][1000 genomes]
rs11820719	1.00[AMR][1000 genomes]
rs11821006	1.00[AFR][1000 genomes]
rs11823001	1.00[AMR][1000 genomes]
rs11824082	1.00[AFR][1000 genomes]
rs11824537	1.00[AMR][1000 genomes]
rs11824802	1.00[AMR][1000 genomes]
rs11825045	1.00[AMR][1000 genomes]
rs11825257	1.00[AFR][1000 genomes]
rs11825327	1.00[AMR][1000 genomes]
rs11826708	1.00[AMR][1000 genomes]
rs11827741	1.00[AMR][1000 genomes]
rs11828579	1.00[AMR][1000 genomes]
rs16907324	1.00[AMR][1000 genomes]
rs34611271	1.00[AMR][1000 genomes]
rs34858937	1.00[AFR][1000 genomes]
rs4698	1.00[AMR][1000 genomes]
rs55638035	1.00[AFR][1000 genomes]
rs55767227	1.00[AMR][1000 genomes]
rs55796000	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55923449	1.00[AFR][1000 genomes]
rs55962722	1.00[AFR][1000 genomes]
rs56013107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56342948	1.00[AFR][1000 genomes]
rs56832220	1.00[AFR][1000 genomes]
rs56875307	0.90[AFR][1000 genomes]
rs56962991	1.00[AMR][1000 genomes]
rs57197571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57226945	1.00[AMR][1000 genomes]
rs57245182	1.00[AMR][1000 genomes]
rs57349511	1.00[AFR][1000 genomes]
rs57361167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57428208	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57458435	1.00[AFR][1000 genomes]
rs57616147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57626581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57644762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57895857	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57975192	1.00[AMR][1000 genomes]
rs58046045	1.00[AMR][1000 genomes]
rs58793550	1.00[AMR][1000 genomes]
rs58810027	1.00[AMR][1000 genomes]
rs59076108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59079092	1.00[AFR][1000 genomes]
rs59107366	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59168644	1.00[AMR][1000 genomes]
rs59476140	1.00[AFR][1000 genomes]
rs59489558	1.00[AFR][1000 genomes]
rs59505179	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59705993	1.00[AFR][1000 genomes]
rs59869332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60161297	1.00[AFR][1000 genomes]
rs60333011	1.00[AMR][1000 genomes]
rs60837023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60846119	1.00[AFR][1000 genomes]
rs60974477	1.00[AFR][1000 genomes]
rs61034877	1.00[AFR][1000 genomes]
rs61291463	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61421359	1.00[AFR][1000 genomes]
rs73402490	1.00[AMR][1000 genomes]
rs73402492	1.00[AMR][1000 genomes]
rs73403912	1.00[AMR][1000 genomes]
rs73404502	1.00[AMR][1000 genomes]
rs73406710	1.00[AMR][1000 genomes]
rs73406750	1.00[AMR][1000 genomes]
rs73406753	1.00[AMR][1000 genomes]
rs73406756	1.00[AMR][1000 genomes]
rs73408778	1.00[AMR][1000 genomes]
rs73408783	1.00[AMR][1000 genomes]
rs73408800	1.00[AMR][1000 genomes]
rs73408802	1.00[AMR][1000 genomes]
rs73410819	1.00[AMR][1000 genomes]
rs73410823	1.00[AMR][1000 genomes]
rs73410824	1.00[AMR][1000 genomes]
rs73410830	1.00[AMR][1000 genomes]
rs73410837	1.00[AMR][1000 genomes]
rs73410839	1.00[AMR][1000 genomes]
rs73410851	1.00[AMR][1000 genomes]
rs73410858	1.00[AMR][1000 genomes]
rs73410861	1.00[AMR][1000 genomes]
rs73410867	1.00[AMR][1000 genomes]
rs73410875	1.00[AMR][1000 genomes]
rs73410879	1.00[AMR][1000 genomes]
rs73410889	1.00[AMR][1000 genomes]
rs73410898	1.00[AMR][1000 genomes]
rs73412807	1.00[AMR][1000 genomes]
rs73412810	1.00[AMR][1000 genomes]
rs73412813	1.00[AMR][1000 genomes]
rs73412820	1.00[AMR][1000 genomes]
rs73412826	1.00[AMR][1000 genomes]
rs73412842	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412867	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412871	1.00[AMR][1000 genomes]
rs73412874	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412879	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412887	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412902	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415005	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415007	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415065	1.00[AFR][1000 genomes]
rs73415071	1.00[AFR][1000 genomes]
rs73415072	1.00[AFR][1000 genomes]
rs73415076	1.00[AFR][1000 genomes]
rs73415079	0.89[AFR][1000 genomes]
rs73415080	1.00[AFR][1000 genomes]
rs73415081	1.00[AFR][1000 genomes]
rs73415082	1.00[AFR][1000 genomes]
rs73415093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73415101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73416903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73419140	1.00[AFR][1000 genomes]
rs73419172	1.00[AFR][1000 genomes]
rs73420920	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1036041	chr11:10131018-10212202	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10178200-10213400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:10181200-10191400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:10184600-10192000	Weak transcription	Fetal Intestine Small	intestine
4	chr11:10184600-10211400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:10186200-10191000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:10186200-10209200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:10187200-10191600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:10187200-10192400	Weak transcription	Colon Smooth Muscle	Colon
9	chr11:10188000-10222800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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