The 2.0 version of rSNPBase

Variant report

Variant rs35393759
Chromosome Location chr1:62462739-62462740
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:62385000-62494200 Weak transcription Aorta Aorta
2 chr1:62409200-62518600 Weak transcription Pancreas Pancrea
3 chr1:62424200-62494200 Weak transcription Esophagus oesophagus
4 chr1:62444200-62479200 Weak transcription Fetal Intestine Small intestine
5 chr1:62446600-62465200 Weak transcription HUES6 Cell Line embryonic stem cell
6 chr1:62446600-62487600 Weak transcription HUES64 Cell Line embryonic stem cell
7 chr1:62446800-62469400 Weak transcription H1 Cell Line embryonic stem cell
8 chr1:62447200-62469400 Weak transcription iPS-18 Cell Line embryonic stem cell
9 chr1:62447400-62481200 Weak transcription Lung lung
10 chr1:62448400-62470400 Weak transcription Ovary ovary
11 chr1:62455200-62463000 Weak transcription Skeletal Muscle Male skeletal muscle
12 chr1:62456200-62478600 Weak transcription Stomach Smooth Muscle stomach
13 chr1:62457000-62473400 Weak transcription Primary T cells from cord blood blood
14 chr1:62458800-62521400 Weak transcription Primary T regulatory cells fromperipheralblood blood
15 chr1:62459000-62484000 Weak transcription Duodenum Mucosa Duodenum
16 chr1:62459000-62516000 Weak transcription Rectal Mucosa Donor 29 rectum
17 chr1:62459000-62530600 Weak transcription Primary T helper cells PMA-I stimulated --
18 chr1:62459200-62464800 Weak transcription HUVEC blood vessel
19 chr1:62459200-62487800 Weak transcription HUES48 Cell Line embryonic stem cell
20 chr1:62459200-62511200 Weak transcription Gastric stomach
21 chr1:62459200-62550000 Weak transcription Primary T cells fromperipheralblood blood
22 chr1:62459400-62479000 Weak transcription Left Ventricle heart
23 chr1:62459400-62484000 Weak transcription Liver Liver
24 chr1:62459400-62493800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
25 chr1:62459600-62464800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
26 chr1:62459600-62464800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
27 chr1:62459600-62478600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr1:62459600-62483600 Weak transcription Rectal Mucosa Donor 31 rectum
29 chr1:62459600-62494200 Weak transcription Sigmoid Colon Sigmoid Colon
30 chr1:62459800-62483600 Weak transcription NHEK skin
31 chr1:62460000-62468600 Weak transcription Breast Myoepithelial Primary Cells Breast
32 chr1:62460000-62478600 Weak transcription Primary T helper cells fromperipheralblood blood
33 chr1:62460000-62499600 Weak transcription Fetal Intestine Large intestine
34 chr1:62460000-62516400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
35 chr1:62460000-62544600 Weak transcription Primary T helper naive cells fromperipheralblood blood
36 chr1:62460200-62487600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
37 chr1:62460200-62516000 Weak transcription HMEC breast
38 chr1:62461200-62463200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
39 chr1:62461800-62463000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
40 chr1:62461800-62479000 Weak transcription Psoas Muscle Psoas
41 chr1:62462600-62463000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
42 chr1:62462600-62463200 Enhancers Skeletal Muscle Female skeletal muscle

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Last update: Aug 31, 2015