Variant report

Variant	rs35399277
Chromosome Location	chr12:33075342-33075343
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:33073552..33076364-chr12:33762087..33763941,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12811328	0.83[AMR][1000 genomes]
rs12816683	0.83[AMR][1000 genomes]
rs12827254	0.83[AMR][1000 genomes]
rs12827744	0.83[AMR][1000 genomes]
rs12830581	0.83[AMR][1000 genomes]
rs17553487	0.83[AMR][1000 genomes]
rs34018607	0.83[AMR][1000 genomes]
rs34113579	0.83[AMR][1000 genomes]
rs34202049	0.83[AMR][1000 genomes]
rs34234620	0.83[AMR][1000 genomes]
rs34398102	0.83[AMR][1000 genomes]
rs34506464	0.83[AMR][1000 genomes]
rs34942504	0.83[AMR][1000 genomes]
rs35118163	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35285975	0.83[AMR][1000 genomes]
rs35398283	0.83[AMR][1000 genomes]
rs35522863	0.83[AMR][1000 genomes]
rs35607659	0.83[AMR][1000 genomes]
rs35681913	0.83[AMR][1000 genomes]
rs35687751	0.83[AMR][1000 genomes]
rs35760728	0.83[AMR][1000 genomes]
rs35777639	0.85[AMR][1000 genomes]
rs35848741	0.83[AMR][1000 genomes]
rs35942647	0.83[AMR][1000 genomes]
rs36042953	0.83[AMR][1000 genomes]
rs4076733	0.83[AMR][1000 genomes]
rs4076734	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4427635	0.81[EUR][1000 genomes]
rs71457664	0.83[AMR][1000 genomes]
rs71457669	0.83[AMR][1000 genomes]
rs71457671	0.83[AMR][1000 genomes]
rs71457675	0.83[AMR][1000 genomes]
rs71457678	0.83[AMR][1000 genomes]
rs71457684	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530421	chr12:32825335-33465991	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1054440	chr12:32872999-33150460	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1035900	chr12:33010643-33079667	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv541458	chr12:33010643-33079667	Strong transcription Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv832367	chr12:33063644-33298967	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:33069600-33076400	Enhancers	HMEC	breast
2	chr12:33072600-33076400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr12:33072800-33076200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr12:33073000-33076200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr12:33074400-33076200	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links