Variant report

Variant	rs35399674
Chromosome Location	chr14:55109136-55109137
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55031933..55036360-chr14:55108967..55113737,8	MCF-7	breast:
2	chr14:55034330..55036089-chr14:55108072..55109847,2	MCF-7	breast:
3	chr14:55100227..55102624-chr14:55106650..55109570,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000020577	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11158019	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12586228	0.94[EUR][1000 genomes]
rs12586646	0.90[ASN][1000 genomes]
rs12586705	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12590927	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12888372	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12890352	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17728293	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2025130	0.81[ASN][1000 genomes]
rs4553503	0.80[ASN][1000 genomes]
rs4898844	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7142955	0.88[ASN][1000 genomes]
rs7155089	0.89[ASN][1000 genomes]
rs7158091	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs911621	0.89[ASN][1000 genomes]
rs942607	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv974464	chr14:55092217-55152792	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55070400-55116200	Weak transcription	HMEC	breast
2	chr14:55095200-55109200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr14:55095600-55109600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr14:55096000-55109400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr14:55096200-55109200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr14:55100200-55109200	Weak transcription	Spleen	Spleen
7	chr14:55103600-55116600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:55104000-55110600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr14:55105000-55109200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr14:55105000-55109200	Weak transcription	Gastric	stomach
11	chr14:55105200-55109200	Weak transcription	NHLF	lung
12	chr14:55105200-55109400	Weak transcription	Fetal Lung	lung
13	chr14:55105200-55109400	Weak transcription	NH-A	brain
14	chr14:55105200-55110200	Weak transcription	Osteobl	bone
15	chr14:55105200-55116000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr14:55105400-55109200	Weak transcription	A549	lung
17	chr14:55105400-55116000	Weak transcription	NHEK	skin
18	chr14:55105600-55109800	Weak transcription	HUVEC	blood vessel
19	chr14:55105600-55110400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr14:55105600-55111600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr14:55105800-55113000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr14:55106000-55110200	Enhancers	Brain Substantia Nigra	brain
23	chr14:55106000-55111400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr14:55106400-55109200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr14:55106400-55109200	Weak transcription	Stomach Smooth Muscle	stomach
26	chr14:55106400-55109400	Weak transcription	Lung	lung
27	chr14:55106400-55109600	Weak transcription	HSMMtube	muscle
28	chr14:55106400-55116000	Weak transcription	HSMM	muscle
29	chr14:55106400-55117800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr14:55106600-55109200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr14:55106600-55109400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr14:55106600-55109400	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr14:55106600-55109400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr14:55106600-55109400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr14:55106600-55109400	Weak transcription	Aorta	Aorta
36	chr14:55106600-55109400	Weak transcription	Right Atrium	heart
37	chr14:55106600-55109600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr14:55106600-55113600	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr14:55107200-55109400	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr14:55107200-55109400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr14:55107200-55109600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr14:55107400-55117200	Weak transcription	Fetal Stomach	stomach
43	chr14:55107600-55109200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr14:55107600-55109400	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr14:55107600-55109400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr14:55107600-55109400	Weak transcription	Placenta	Placenta
47	chr14:55107600-55109400	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr14:55107600-55112400	Weak transcription	Adipose Nuclei	Adipose
49	chr14:55107600-55117000	Weak transcription	Fetal Muscle Trunk	muscle
50	chr14:55107600-55118000	Weak transcription	Brain Cingulate Gyrus	brain

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