Variant report

Variant	rs7142955
Chromosome Location	chr14:55109709-55109710
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55038776..55039599-chr14:55109345..55110360,4	MCF-7	breast:
2	chr14:55031933..55036360-chr14:55108967..55113737,8	MCF-7	breast:
3	chr14:55031968..55033130-chr14:55109378..55109937,3	MCF-7	breast:
4	chr14:55034330..55036089-chr14:55108072..55109847,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000020577	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2025130	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2358887	0.83[EUR][1000 genomes]
rs35399674	0.88[ASN][1000 genomes]
rs4553503	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7151563	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7158091	0.83[ASN][1000 genomes]
rs8022597	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv974464	chr14:55092217-55152792	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55070400-55116200	Weak transcription	HMEC	breast
2	chr14:55103600-55116600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:55104000-55110600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr14:55105200-55110200	Weak transcription	Osteobl	bone
5	chr14:55105200-55116000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr14:55105400-55116000	Weak transcription	NHEK	skin
7	chr14:55105600-55109800	Weak transcription	HUVEC	blood vessel
8	chr14:55105600-55110400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr14:55105600-55111600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr14:55105800-55113000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr14:55106000-55110200	Enhancers	Brain Substantia Nigra	brain
12	chr14:55106000-55111400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr14:55106400-55116000	Weak transcription	HSMM	muscle
14	chr14:55106400-55117800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr14:55106600-55113600	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr14:55107400-55117200	Weak transcription	Fetal Stomach	stomach
17	chr14:55107600-55112400	Weak transcription	Adipose Nuclei	Adipose
18	chr14:55107600-55117000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr14:55107600-55118000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr14:55107600-55121400	Weak transcription	Pancreas	Pancrea
21	chr14:55107800-55112400	Weak transcription	NHDF-Ad	bronchial
22	chr14:55107800-55116600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr14:55108000-55112600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr14:55108200-55114200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr14:55108600-55111600	Enhancers	Fetal Heart	heart
26	chr14:55108800-55110800	Enhancers	Colon Smooth Muscle	Colon
27	chr14:55108800-55111000	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr14:55108800-55111400	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr14:55109000-55110000	Enhancers	Right Ventricle	heart
30	chr14:55109000-55110600	Enhancers	Rectal Smooth Muscle	rectum
31	chr14:55109000-55110800	Enhancers	Left Ventricle	heart
32	chr14:55109000-55110800	Enhancers	Psoas Muscle	Psoas
33	chr14:55109000-55111000	Flanking Active TSS	HepG2	liver
34	chr14:55109000-55111600	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr14:55109000-55111600	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr14:55109200-55109800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
37	chr14:55109200-55109800	Enhancers	Brain Anterior Caudate	brain
38	chr14:55109200-55109800	Enhancers	Gastric	stomach
39	chr14:55109200-55110200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr14:55109200-55110200	Enhancers	A549	lung
41	chr14:55109200-55110400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr14:55109200-55110400	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr14:55109200-55110800	Enhancers	Stomach Smooth Muscle	stomach
44	chr14:55109200-55111400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr14:55109200-55111400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr14:55109200-55111400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr14:55109200-55111400	Enhancers	NHLF	lung
48	chr14:55109200-55111600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr14:55109200-55113400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr14:55109400-55109800	Enhancers	H1 Cell Line	embryonic stem cell

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