Variant report

Variant	rs7151563
Chromosome Location	chr14:55121733-55121734
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55121459..55123514-chr14:55126031..55127873,3	MCF-7	breast:
2	chr14:55031461..55035668-chr14:55117629..55122192,5	MCF-7	breast:
3	chr14:55119482..55121341-chr14:55121641..55124299,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000020577	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11158019	0.82[ASN][1000 genomes]
rs12586646	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12586705	0.85[ASN][1000 genomes]
rs12888372	0.87[ASN][1000 genomes]
rs12890352	0.82[ASN][1000 genomes]
rs17728293	0.82[ASN][1000 genomes]
rs2025130	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2358887	0.88[EUR][1000 genomes]
rs4553503	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4898844	0.83[ASN][1000 genomes]
rs7142955	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7155089	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8011374	0.88[EUR][1000 genomes]
rs8022597	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs911621	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv974464	chr14:55092217-55152792	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55113200-55122000	Enhancers	Fetal Heart	heart
2	chr14:55116200-55122000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr14:55117600-55121800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr14:55117600-55129400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr14:55119000-55132400	Enhancers	HepG2	liver
6	chr14:55119200-55121800	Enhancers	Psoas Muscle	Psoas
7	chr14:55119400-55122200	Enhancers	Left Ventricle	heart
8	chr14:55119600-55121800	Enhancers	Lung	lung
9	chr14:55119600-55122200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr14:55119600-55122200	Enhancers	Right Ventricle	heart
11	chr14:55119800-55121800	Enhancers	Fetal Lung	lung
12	chr14:55119800-55122000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr14:55119800-55122200	Enhancers	Placenta Amnion	Placenta Amnion
14	chr14:55119800-55135800	Weak transcription	Fetal Brain Male	brain
15	chr14:55120000-55121800	Enhancers	HMEC	breast
16	chr14:55120000-55122000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr14:55120000-55122000	Enhancers	Fetal Muscle Leg	muscle
18	chr14:55120000-55122000	Enhancers	NHLF	lung
19	chr14:55120000-55122200	Enhancers	Right Atrium	heart
20	chr14:55120000-55179400	Weak transcription	Fetal Intestine Small	intestine
21	chr14:55120200-55124600	Weak transcription	Fetal Muscle Trunk	muscle
22	chr14:55120400-55121800	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr14:55120400-55122000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr14:55120600-55122000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr14:55120600-55122000	Enhancers	Rectal Smooth Muscle	rectum
26	chr14:55120800-55121800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr14:55120800-55122200	Enhancers	Adipose Nuclei	Adipose
28	chr14:55120800-55122200	Enhancers	Stomach Smooth Muscle	stomach
29	chr14:55120800-55125600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr14:55120800-55137400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr14:55121000-55121800	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr14:55121000-55121800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr14:55121000-55121800	Flanking Active TSS	HUVEC	blood vessel
34	chr14:55121000-55121800	Enhancers	NH-A	brain
35	chr14:55121000-55122000	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr14:55121000-55122000	Enhancers	Osteobl	bone
37	chr14:55121000-55122200	Enhancers	NHDF-Ad	bronchial
38	chr14:55121000-55123200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr14:55121000-55124600	Weak transcription	NHEK	skin
40	chr14:55121000-55138200	Weak transcription	Aorta	Aorta
41	chr14:55121200-55121800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr14:55121200-55121800	Enhancers	A549	lung
43	chr14:55121200-55122000	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr14:55121200-55122200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr14:55121200-55124400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr14:55121200-55126800	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr14:55121400-55121800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
48	chr14:55121400-55122000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr14:55121400-55122000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr14:55121400-55122000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links