Variant report

Variant	rs35399679
Chromosome Location	chr11:45396882-45396883
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17788707	1.00[AFR][1000 genomes]
rs56149423	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv467869	chr11:45389225-45415035	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv554185	chr11:45389225-45415035	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45393800-45397000	Enhancers	Fetal Thymus	thymus
2	chr11:45393800-45406200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:45394200-45406200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:45394400-45403000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:45395400-45397000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr11:45395400-45397200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr11:45395400-45397400	Enhancers	Primary T cells fromperipheralblood	blood
8	chr11:45395600-45397400	Enhancers	Primary T cells from cord blood	blood
9	chr11:45395600-45397600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr11:45395600-45397600	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr11:45395800-45397000	Enhancers	Primary B cells from peripheral blood	blood
12	chr11:45395800-45397000	Enhancers	Primary hematopoietic stem cells	blood
13	chr11:45395800-45397000	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr11:45395800-45397000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr11:45395800-45397000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr11:45395800-45397000	Enhancers	Fetal Muscle Leg	muscle
17	chr11:45395800-45397400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr11:45396000-45397000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr11:45396000-45397200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:45396400-45397000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr11:45396600-45404400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr11:45396800-45397200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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