Variant report

Variant	rs35401686
Chromosome Location	chr10:96921537-96921538
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1033884	0.83[EUR][1000 genomes]
rs13191722	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13196200	0.82[AMR][1000 genomes]
rs13198367	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13198396	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13208023	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13214850	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs13215693	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13215830	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076113	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17076193	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2349751	0.83[EUR][1000 genomes]
rs34065449	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34310606	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs34373559	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34414645	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs34674470	0.83[EUR][1000 genomes]
rs34973183	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs35073653	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35446650	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35538941	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35918911	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6931007	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7767593	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7771311	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	esv21432	chr10:96856006-96996043	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv517863	chr10:96904057-96928702	Weak transcription Enhancers ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3396941	chr10:96921262-96925460	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96918800-96923200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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