Variant report

Variant	rs35417943
Chromosome Location	chr13:86160036-86160037
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr13:86159861-86160160	U2OS	brain:	n/a	n/a

Variant related genes	Relation type
RNU6-72P	TF binding region

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12854601	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12867781	1.00[ASN][1000 genomes]
rs12875317	1.00[ASN][1000 genomes]
rs1610384	1.00[ASN][1000 genomes]
rs34103441	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34227361	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34298128	1.00[ASN][1000 genomes]
rs34971145	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs596482	1.00[ASN][1000 genomes]
rs599428	1.00[ASN][1000 genomes]
rs659907	1.00[ASN][1000 genomes]
rs7338483	1.00[ASN][1000 genomes]
rs9531803	1.00[ASN][1000 genomes]
rs9547240	1.00[ASN][1000 genomes]
rs9547245	1.00[ASN][1000 genomes]
rs9547249	1.00[ASN][1000 genomes]
rs9547271	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9547275	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9547277	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9547278	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9547279	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9547280	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9547281	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9602779	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9645974	1.00[ASN][1000 genomes]
rs9645975	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916866	chr13:85505771-86241562	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1050105	chr13:85524968-86218429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv541857	chr13:85524968-86218429	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv2752724	chr13:85810499-86320999	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1037563	chr13:85830511-86414012	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1053499	chr13:85959321-86197157	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv541859	chr13:85959321-86197157	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv471162	chr13:85994700-86296819	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv456051	chr13:85994700-86306452	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv562609	chr13:85994700-86306452	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv428608	chr13:86109178-86262577	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:86156000-86162400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr13:86157600-86160600	Weak transcription	Hela-S3	cervix
3	chr13:86159200-86160200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr13:86159400-86160200	ZNF genes & repeats	HMEC	breast
5	chr13:86159600-86160200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr13:86159600-86161200	Weak transcription	A549	lung
7	chr13:86159800-86162600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr13:86160000-86161000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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