Variant report

Variant	rs35420758
Chromosome Location	chr7:100549865-100549866
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr7:100549688-100550062	GM12878	blood:	n/a	n/a
2	CTBP2	chr7:100548802-100549986	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:100549832..100555944-chr7:100607722..100611748,10	K562	blood:
2	chr7:100493649..100495175-chr7:100549463..100550982,2	MCF-7	breast:
3	chr7:100549832..100554872-chr7:100605467..100612701,10	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ACHE-4	chr7:100549481-100550424	NONHSAT122426

No data

Variant related genes	Relation type
MUC3A	TF binding region
ENSG00000225946	Chromatin interaction
ENSG00000169894	Chromatin interaction
ENSG00000087085	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs13223961	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1832517	chr7:100355490-100749246	Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	esv2758125	chr7:100355490-100749246	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
3	esv2759547	chr7:100355490-100749246	Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
4	nsv1032673	chr7:100382250-100606794	Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
5	nsv427795	chr7:100525848-100554827	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv1826021	chr7:100525848-100749246	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	esv1846644	chr7:100525848-100749246	Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
8	nsv437026	chr7:100533822-100610772	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv511361	chr7:100548960-100553306	Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	esv16826	chr7:100548984-100553179	ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:100544800-100550600	Weak transcription	Right Atrium	heart
2	chr7:100547200-100550600	Weak transcription	Gastric	stomach
3	chr7:100548400-100550600	Weak transcription	Liver	Liver
4	chr7:100548400-100550600	Weak transcription	Colonic Mucosa	Colon
5	chr7:100548400-100550600	Strong transcription	Rectal Mucosa Donor 31	rectum
6	chr7:100548600-100550000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr7:100548600-100550600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:100548600-100550600	Weak transcription	Fetal Intestine Large	intestine
9	chr7:100548600-100550600	Weak transcription	Fetal Thymus	thymus
10	chr7:100549400-100550600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:100549400-100550600	Strong transcription	Fetal Intestine Small	intestine
12	chr7:100549600-100550200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr7:100549600-100550400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr7:100549600-100550600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr7:100549600-100550600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr7:100549600-100550600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr7:100549600-100550600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:100549600-100550600	Strong transcription	Duodenum Mucosa	Duodenum
19	chr7:100549600-100551200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr7:100549800-100550200	Weak transcription	Spleen	Spleen
21	chr7:100549800-100550400	Weak transcription	Thymus	Thymus
22	chr7:100549800-100550600	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr7:100549800-100550600	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr7:100549800-100550600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr7:100549800-100550600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links