Variant report

Variant	rs35423549
Chromosome Location	chr3:17739615-17739616
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11128843	0.80[AMR][1000 genomes]
rs34786175	0.82[AMR][1000 genomes]
rs7622878	0.81[EUR][1000 genomes]
rs7627064	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013069	chr3:17560456-17783372	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv1849856	chr3:17646794-17748688	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1828838	chr3:17646794-17757960	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17711400-17755000	Weak transcription	Primary B cells from peripheral blood	blood
2	chr3:17720000-17747400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:17726800-17742200	Weak transcription	Stomach Mucosa	stomach
4	chr3:17731600-17755600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:17732200-17749400	Weak transcription	NHEK	skin
6	chr3:17732600-17755400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr3:17733200-17755600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:17733400-17747000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:17734800-17753200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr3:17735200-17747600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:17735200-17755600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:17735200-17755800	Weak transcription	Lung	lung
13	chr3:17735400-17750800	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr3:17735400-17754200	Weak transcription	Primary B cells from cord blood	blood
15	chr3:17735400-17755400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr3:17735400-17755600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:17735400-17755800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr3:17736000-17745000	Weak transcription	HepG2	liver
19	chr3:17736000-17747600	Weak transcription	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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