Variant report

Variant	rs35429470
Chromosome Location	chr12:122613192-122613193
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:122515765..122517447-chr12:122610871..122613524,2	MCF-7	breast:
2	chr12:122612652..122615876-chr12:122685490..122688136,3	K562	blood:
3	chr12:122457603..122461416-chr12:122608714..122613817,5	MCF-7	breast:
4	chr12:122516422..122518612-chr12:122611562..122613358,2	MCF-7	breast:
5	chr12:122611551..122613611-chr12:122618331..122620182,2	K562	blood:
6	chr12:122611022..122613336-chr12:122620039..122621726,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176383	Chromatin interaction
ENSG00000255856	Chromatin interaction
ENSG00000175727	Chromatin interaction
ENSG00000110987	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs34906460	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs66751701	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529868	chr12:121956483-122944265	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
2	nsv916686	chr12:122240149-122714056	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv899569	chr12:122478728-122630909	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv527450	chr12:122481290-122676531	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:122584200-122622000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:122599000-122614400	Weak transcription	Fetal Kidney	kidney
3	chr12:122608200-122613200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr12:122608200-122618800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr12:122608200-122618800	Weak transcription	GM12878-XiMat	blood
6	chr12:122608400-122625400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr12:122608600-122613400	Weak transcription	NHDF-Ad	bronchial
8	chr12:122608600-122614200	Weak transcription	NH-A	brain
9	chr12:122608600-122632800	Strong transcription	Fetal Stomach	stomach
10	chr12:122610000-122614400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr12:122610000-122614400	Strong transcription	NHEK	skin
12	chr12:122610000-122615400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr12:122610000-122617400	Strong transcription	Primary B cells from cord blood	blood
14	chr12:122610000-122621800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr12:122610200-122619600	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr12:122610200-122629200	Strong transcription	Primary T cells from cord blood	blood
17	chr12:122610200-122629200	Strong transcription	Fetal Thymus	thymus
18	chr12:122610400-122630600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr12:122610400-122630600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr12:122610600-122629200	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr12:122610600-122629400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr12:122610600-122633200	Weak transcription	Right Atrium	heart
23	chr12:122610800-122628800	Strong transcription	Primary B cells from peripheral blood	blood
24	chr12:122610800-122630600	Strong transcription	Thymus	Thymus
25	chr12:122611000-122616200	Strong transcription	K562	blood
26	chr12:122611200-122613800	Weak transcription	Psoas Muscle	Psoas
27	chr12:122611200-122614200	Strong transcription	Fetal Muscle Trunk	muscle
28	chr12:122611200-122616000	Strong transcription	Primary hematopoietic stem cells	blood
29	chr12:122611200-122620600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr12:122611200-122620800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr12:122611200-122626000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr12:122611200-122630400	Strong transcription	Gastric	stomach
33	chr12:122611400-122613200	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr12:122611400-122613200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr12:122611400-122614600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr12:122611400-122615000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr12:122611400-122618600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr12:122611400-122628800	Strong transcription	Pancreas	Pancrea
39	chr12:122611400-122629800	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr12:122611400-122630400	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr12:122611600-122613800	Enhancers	Fetal Heart	heart
42	chr12:122611600-122614200	Strong transcription	Fetal Muscle Leg	muscle
43	chr12:122611600-122621200	Strong transcription	Primary T helper cells PMA-I stimulated	--
44	chr12:122611600-122629000	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr12:122611600-122630000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr12:122611600-122630600	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr12:122611800-122613200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr12:122611800-122613400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr12:122611800-122614000	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr12:122611800-122614200	Strong transcription	Muscle Satellite Cultured Cells	--

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