Variant report

Variant	rs35450692
Chromosome Location	chr5:75733778-75733779
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13183341	0.87[EUR][1000 genomes]
rs34483409	0.89[EUR][1000 genomes]
rs35145043	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7731045	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870415	chr5:75526088-75738412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv882206	chr5:75676658-75746813	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75703600-75747000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr5:75722200-75735200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr5:75722400-75737000	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr5:75722600-75737800	Weak transcription	Stomach Mucosa	stomach
5	chr5:75722800-75767800	Weak transcription	Ovary	ovary
6	chr5:75724000-75735000	Weak transcription	Primary T cells from cord blood	blood
7	chr5:75724200-75738200	Weak transcription	Pancreas	Pancrea
8	chr5:75724200-75748400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:75726200-75744600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr5:75728800-75736400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr5:75729000-75738200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr5:75729400-75751600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr5:75729800-75740800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr5:75731600-75734400	Weak transcription	HepG2	liver
15	chr5:75731600-75736600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr5:75732000-75745800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr5:75733000-75741000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr5:75733200-75736200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
19	chr5:75733600-75735600	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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