Variant report

Variant	rs34483409
Chromosome Location	chr5:75729751-75729752
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10942770	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13157262	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13183341	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35145043	0.85[EUR][1000 genomes]
rs35450692	0.89[EUR][1000 genomes]
rs4314381	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4382145	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7731045	0.88[EUR][1000 genomes]
rs9293683	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870415	chr5:75526088-75738412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv882206	chr5:75676658-75746813	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75703000-75731800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr5:75703600-75747000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr5:75711000-75733600	Weak transcription	Thymus	Thymus
4	chr5:75721000-75730200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:75722200-75735200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr5:75722400-75737000	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr5:75722600-75737800	Weak transcription	Stomach Mucosa	stomach
8	chr5:75722800-75767800	Weak transcription	Ovary	ovary
9	chr5:75724000-75732600	Weak transcription	Fetal Intestine Small	intestine
10	chr5:75724000-75735000	Weak transcription	Primary T cells from cord blood	blood
11	chr5:75724200-75738200	Weak transcription	Pancreas	Pancrea
12	chr5:75724200-75748400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr5:75726200-75744600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr5:75726600-75730200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr5:75728400-75729800	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr5:75728600-75729800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr5:75728800-75736400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr5:75729000-75729800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr5:75729000-75738200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr5:75729200-75729800	Enhancers	Primary hematopoietic stem cells	blood
21	chr5:75729400-75730400	Weak transcription	HepG2	liver
22	chr5:75729400-75732000	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr5:75729400-75751600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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