Variant report

Variant	rs10942770
Chromosome Location	chr5:75712616-75712617
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13157262	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13183341	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34483409	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4314381	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4382145	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9293683	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9293684	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870415	chr5:75526088-75738412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv882206	chr5:75676658-75746813	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75701000-75721600	Weak transcription	Fetal Stomach	stomach
2	chr5:75701600-75713000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr5:75703000-75731800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr5:75703200-75717800	Weak transcription	Small Intestine	intestine
5	chr5:75703400-75715600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr5:75703400-75718000	Weak transcription	Primary T cells from cord blood	blood
7	chr5:75703600-75747000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr5:75704600-75716800	Weak transcription	Fetal Intestine Small	intestine
9	chr5:75706800-75718000	Weak transcription	Fetal Lung	lung
10	chr5:75707000-75727600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr5:75707800-75717600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:75707800-75718000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr5:75709800-75718000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr5:75709800-75727200	Weak transcription	Primary B cells from cord blood	blood
15	chr5:75710200-75715400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr5:75710200-75715800	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr5:75710200-75717000	Weak transcription	Pancreas	Pancrea
18	chr5:75710200-75719000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr5:75710200-75720600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr5:75710200-75720800	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr5:75710600-75716600	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr5:75710600-75718000	Weak transcription	Primary hematopoietic stem cells	blood
23	chr5:75710800-75717000	Weak transcription	Gastric	stomach
24	chr5:75710800-75719000	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr5:75711000-75733600	Weak transcription	Thymus	Thymus
26	chr5:75711200-75715600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr5:75711400-75714800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr5:75711600-75716800	Weak transcription	HepG2	liver
29	chr5:75712000-75716400	Weak transcription	Liver	Liver
30	chr5:75712200-75712800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr5:75712200-75713000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr5:75712200-75713600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr5:75712200-75717600	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr5:75712200-75720400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr5:75712400-75716600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr5:75712400-75720600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr5:75712600-75713800	Enhancers	Primary T cells fromperipheralblood	blood

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