Variant report

Variant	rs4382145
Chromosome Location	chr5:75717455-75717456
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:75717306..75720750-chr5:75722224..75725340,4	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10942770	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13157262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13183341	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34483409	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4314381	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9293683	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9293684	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870415	chr5:75526088-75738412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv882206	chr5:75676658-75746813	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75701000-75721600	Weak transcription	Fetal Stomach	stomach
2	chr5:75703000-75731800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:75703200-75717800	Weak transcription	Small Intestine	intestine
4	chr5:75703400-75718000	Weak transcription	Primary T cells from cord blood	blood
5	chr5:75703600-75747000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr5:75706800-75718000	Weak transcription	Fetal Lung	lung
7	chr5:75707000-75727600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr5:75707800-75717600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:75707800-75718000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr5:75709800-75718000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr5:75709800-75727200	Weak transcription	Primary B cells from cord blood	blood
12	chr5:75710200-75719000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr5:75710200-75720600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr5:75710200-75720800	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr5:75710600-75718000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr5:75710800-75719000	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr5:75711000-75733600	Weak transcription	Thymus	Thymus
18	chr5:75712200-75717600	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr5:75712200-75720400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr5:75712400-75720600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr5:75714000-75720400	Weak transcription	Placenta	Placenta
22	chr5:75714800-75720400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr5:75715600-75718800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr5:75715600-75719800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr5:75715800-75718800	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr5:75716000-75717600	Weak transcription	Fetal Kidney	kidney
27	chr5:75716000-75718200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr5:75716400-75717800	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr5:75716400-75719200	Enhancers	Liver	Liver
30	chr5:75716600-75718600	Enhancers	Stomach Mucosa	stomach
31	chr5:75716600-75718800	Enhancers	Duodenum Mucosa	Duodenum
32	chr5:75716600-75720400	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr5:75716800-75718000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr5:75716800-75718400	Enhancers	HepG2	liver
35	chr5:75716800-75718600	Enhancers	Fetal Intestine Small	intestine
36	chr5:75716800-75718800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr5:75717000-75717600	Enhancers	Pancreas	Pancrea
38	chr5:75717000-75717800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr5:75717000-75718000	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr5:75717200-75717800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr5:75717200-75717800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr5:75717200-75718200	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr5:75717200-75719400	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr5:75717200-75720400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr5:75717400-75717600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr5:75717400-75718000	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr5:75717400-75718400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr5:75717400-75720800	Weak transcription	Gastric	stomach
49	chr5:75717400-75722400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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