Variant report

Variant	rs35457834
Chromosome Location	chr2:30375957-30375958
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:30366474..30375732-chr2:30375765..30384167,14	MCF-7	breast:
2	chr2:30375240..30377152-chr2:30455501..30457902,2	K562	blood:
3	chr2:30369876..30376242-chr2:30376921..30381158,8	K562	blood:

Variant related genes	Relation type
ENSG00000213626	Chromatin interaction
ENSG00000233862	Chromatin interaction
ENSG00000119801	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13014039	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34924305	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs36107855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv1002657	chr2:30339312-30516535	Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30371000-30380200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:30371000-30380600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:30371400-30380000	Weak transcription	Esophagus	oesophagus
4	chr2:30371400-30380000	Weak transcription	Dnd41	blood
5	chr2:30371400-30380200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr2:30371400-30384800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr2:30371600-30376000	Weak transcription	Pancreas	Pancrea
8	chr2:30371600-30380200	Weak transcription	Colonic Mucosa	Colon
9	chr2:30371800-30385000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr2:30372200-30378800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:30372400-30378400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr2:30372800-30376200	Weak transcription	Gastric	stomach
13	chr2:30372800-30376600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr2:30372800-30377400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr2:30372800-30378600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr2:30372800-30378600	Weak transcription	Stomach Mucosa	stomach
17	chr2:30372800-30379600	Weak transcription	Fetal Stomach	stomach
18	chr2:30372800-30379600	Weak transcription	Lung	lung
19	chr2:30372800-30380200	Weak transcription	Fetal Brain Male	brain
20	chr2:30373000-30376000	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr2:30373000-30376200	Weak transcription	Spleen	Spleen
22	chr2:30373000-30377400	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr2:30373000-30379600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr2:30373200-30378600	Weak transcription	Fetal Kidney	kidney
25	chr2:30373200-30379400	Weak transcription	Brain Angular Gyrus	brain
26	chr2:30373200-30379600	Weak transcription	Brain Anterior Caudate	brain
27	chr2:30373200-30379600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr2:30373200-30379800	Weak transcription	Fetal Brain Female	brain
29	chr2:30373200-30380200	Weak transcription	Brain Germinal Matrix	brain
30	chr2:30373200-30380400	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr2:30373200-30396400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr2:30373400-30376000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr2:30373400-30376000	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr2:30373400-30376200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr2:30373400-30376200	Weak transcription	NH-A	brain
36	chr2:30373400-30376800	Weak transcription	Aorta	Aorta
37	chr2:30373400-30378800	Weak transcription	Left Ventricle	heart
38	chr2:30373400-30379200	Weak transcription	Brain Hippocampus Middle	brain
39	chr2:30373400-30380200	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr2:30373400-30381400	Weak transcription	HMEC	breast
41	chr2:30373600-30376200	Weak transcription	Liver	Liver
42	chr2:30373600-30376200	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr2:30373600-30376200	Weak transcription	NHDF-Ad	bronchial
44	chr2:30373600-30378800	Weak transcription	NHEK	skin
45	chr2:30373800-30376200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr2:30373800-30377800	Weak transcription	HUVEC	blood vessel
47	chr2:30373800-30378000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr2:30373800-30379600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr2:30373800-30379600	Weak transcription	Fetal Lung	lung
50	chr2:30373800-30380200	Weak transcription	Stomach Smooth Muscle	stomach

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